Desulfobacter hydrogenophilus: EYB58_22035
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Entry
EYB58_22035 CDS
T10839
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dhg Desulfobacter hydrogenophilus
Pathway
dhg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dhg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYB58_22035 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhg03019
]
EYB58_22035 (rny)
Messenger RNA biogenesis [BR:
dhg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EYB58_22035 (rny)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
QBH15343
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All DBs
Position
complement(4951474..4953036)
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AA seq
520 aa
AA seq
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MSSTMMLAFMLVLLAGGAAILYVIKIKIDQQRLDFQEEQRVAMEQATKKAETLLREATLE
ARSRLLEMKSTFDAETEETRAELKKEERRLSKKSEKLDNLEDQCAKKEKNIEKNERTVAE
KLESVARKEESYTQLLDEIKKELEKVSGMTLDQAKELLLKTMEDEARHEGAKMVKKITTE
VREKADKEAKKIISTAIQRYAGDYVAERTVSVVNLPGDEMKGRIIGREGRNIRALEAATG
IDLIIDDTPEAVILSGFNPVRREVARLSLEKLISDGRIHPARIEDVVARATEEVDLVIKE
AGEQAAFDLGVHGIDPELIKVLGKLKFRTSYAQNVLQHSVEVAFLAGIIAAELGLDIKLA
KRMGLLHDIGKAVDHEVDGAHAIIGAKLAKKYGESQSVINAIAAHHEDQMPESVYDFIVQ
SADALSGARPGARKESLENYVKRLEDLENIANSFDGVVNTYAIQAGREIRVITESEKITD
ESAMLLSKDIARQIEENLTFPGQVKVVVIRETRAVEYTRK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgagttctacaatgatgcttgcattcatgctggtactgcttgctggtggtgctgccatt
ttatatgtgataaaaataaaaattgaccagcagagacttgatttccaagaagaacaacgt
gttgccatggaacaagcaaccaaaaaagctgaaactctgcttagggaggcaacactggag
gctcgctcgcgtctgctcgaaatgaaaagcacctttgatgctgagacagaagagacccgg
gcggaattgaaaaaagaggaacgaaggctttctaaaaaaagtgaaaagctcgataacctt
gaagaccaatgtgccaaaaaagaaaaaaatatagagaaaaatgaacggaccgttgcggaa
aaacttgaatctgtagcccgaaaagaagaatcttatactcagcttcttgacgaaataaaa
aaagagcttgaaaaagtctccgggatgacccttgatcaggcaaaagaactgctacttaaa
accatggaggatgaagccaggcatgaaggggccaaaatggttaaaaaaattactaccgaa
gtcagggaaaaagcggataaagaggccaaaaagattatatctaccgccattcagcgttat
gccggtgactatgtggccgagcgtaccgtttctgtggttaatctgcccggagacgaaatg
aagggccgaattatcggcagagaaggccgcaacatccgggccttggaggccgcaactgga
attgatctgattattgatgatactccggaagctgttattttatcagggttcaaccctgtc
aggcgggaggtggcaaggctttcccttgaaaaattaatttccgacggaagaattcatcct
gcccgtattgaggatgttgtggcgcgtgcaacggaagaagttgatttggtgattaaagaa
gcaggcgagcaggctgcatttgatttgggtgtgcacggcattgatccggaattgatcaag
gtgcttggtaagcttaaattcagaacctcttatgcccagaatgtcttgcagcattctgtc
gaagtcgcttttctggccggtatcatcgctgctgagcttggtctggatatcaagcttgcc
aaacgtatgggactgcttcacgatattgggaaggcagtggaccatgaagtagatggggcc
catgccattattggtgccaagcttgcaaaaaagtacggtgagagtcaaagcgttattaat
gccattgctgcccaccatgaagatcaaatgcctgaaagtgtttatgattttattgtgcaa
tccgcagatgcgctttccggtgccagacccggcgctagaaaagaaagccttgaaaattac
gttaaacgtttagaagatctagaaaatattgcaaatagttttgatggtgtggtaaacacc
tatgccattcaggccgggcgtgagattcgggtcattactgaaagtgaaaaaattacggat
gaaagtgcaatgctgctttcaaaggatattgcccgccagatcgaagaaaatctgacattt
ccgggccaggtcaaagttgttgttattcgggaaaccagagcagttgaatataccaggaaa
tga
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