Dermatobacter hominis: LH044_19745
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Entry
LH044_19745 CDS
T09351
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dhi
Dermatobacter hominis
Pathway
dhi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LH044_19745 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dhi03400
]
LH044_19745 (ligD)
Enzymes [BR:
dhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LH044_19745 (ligD)
DNA repair and recombination proteins [BR:
dhi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LH044_19745 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DEK_C
Motif
Other DBs
NCBI-ProteinID:
UDY35551
LinkDB
All DBs
Position
4226981..4227898
Genome browser
AA seq
305 aa
AA seq
DB search
MADGTPVRIDGRTLSLTNLDKVLYPDTGTTKSEVIDYYARIAPVMVTHTAGRCMTMRRYP
NGVDGKSFFEKRCPSHRPDWVPTAVGPGDRKGELRYCRFDEPAAIVWAANLAALELHAPM
ARSDDLEHPLMCVFDLDPGPGTAIPECAELALEIREILASADLDCVAKTSGSKGMQVYVP
LNDPGPGAADHEHCSSFALAVGQMLAQRHPKGVTTTMAKAERPGKVFVDWSQNAHHKTTV
CVYSMRARPAPTVSTPLDWDEVAAAADGDEPLVFRIDDVLARVEERGDLFAPAVELVQHL
PRARS
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggcacgccggtccgcatcgacggccgcacgctctcgctgaccaacctcgac
aaggtgctgtacccggacacggggaccacgaagtccgaggtcatcgactactacgcccgt
atcgccccggtgatggtcacccacaccgcgggccggtgcatgacgatgcgccgctacccg
aacggggtggacggcaagtcgttcttcgagaagcgctgcccgtcgcaccggcccgactgg
gtgccgaccgccgtcggaccgggcgaccgcaagggcgagctgcgctactgccggttcgac
gagccggccgcgatcgtctgggccgcgaacctggccgccctcgagctccacgccccgatg
gcccgctcggacgacctcgagcacccgctcatgtgcgtgttcgacctggaccccggtccc
ggcacggcgatccccgagtgcgccgagctggcgctcgagatcagggagatcctggcgagc
gccgacctcgactgcgtggccaagacctcggggtcgaagggcatgcaggtgtacgtgccg
ctcaacgacccgggcccgggggcggccgaccacgagcactgctcgtcgttcgcgctggcc
gtcgggcagatgctggcgcaacggcacccgaagggcgtcacgacgacgatggccaaggcg
gagcggccgggcaaggtcttcgtcgactggtcccagaacgcgcaccacaagaccaccgtg
tgcgtgtactcgatgcgggcccgtccggcgccgaccgtgtcgaccccgctcgactgggac
gaggtggccgcggccgccgacggcgacgagccgctcgtcttccggatcgacgacgtcctg
gcccgggtcgaggagcggggcgacctgttcgccccggccgtcgagctggtccagcacctg
ccccgcgcccgttcctga
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