Delftia sp. HK171: BO996_00715
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Entry
BO996_00715 CDS
T04584
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dhk
Delftia sp. HK171
Pathway
dhk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dhk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BO996_00715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dhk03021
]
BO996_00715
03400 DNA repair and recombination proteins [BR:
dhk03400
]
BO996_00715
Enzymes [BR:
dhk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BO996_00715
Transcription machinery [BR:
dhk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BO996_00715
DNA repair and recombination proteins [BR:
dhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BO996_00715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
APE46480
LinkDB
All DBs
Position
complement(173351..177580)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMTEDDYEAKRTEYGDEFEAKM
GAEGIKDLLEGIDIDVETERLRGDLTGSEVKVKKNAKRLKLLEAFKKSGIKPGWMVMEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPYLK
LHQCGLPKLMALELFKPFIFAQLEQRGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYHATRERINGKGEGMIFADIGEVQRALDSDQV
ELAAKISVRLTEWTKNKDSGEFEPSTSLVETTVGRALMSEILPKGLPFSHMNKALKKKEI
SKLINASFRKCGLKATVVFADKLLQNGFRLSTHAGISIAIGDMLVPPQKAEIIGRAEAEV
KEIEQQYVSGLVTAGERYNKVVDIWGKAGDEVSKVMMAQLAKEKVIDRHGNEVEQESFNA
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVNEDDCGTTNGALMRAIVEGGEVIESLRDRVLG
RTTAEDVVHPETLAVLLPAGTLLNEDGIDELELQGVDEIKVRTALNCETRYGLCAKCYGR
DLGRGGQINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGAISFN
STMRYVSNTKGELVVISRSGEIVISDNGRERERHKVPYGAVLTVRPDQQVKAGLILANWD
PLTRPIITEYAGQVRFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPQVKLID
ANNQEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRVA
ELFEARTPKDKGTLAEMTGTISFGKETKGKVRMQITDLDGKVWEELVPKEKNILVHEGQV
VNKGESIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRR
VVVENTGDSTYIAGEQVERSEILNTNEALQREGKIPATYSNVLLGITKASLSTDSFISAA
SFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKDAMDDAERRAI
ADAEAAELAGVMADDDAGVAAVAGDASAD
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctctactcgacctgttcaagcaattcacgcctgatgagcatttcgatgccatc
aagatcggtctggcttctcccgagaagatccgttcctggtccttcggcgaggtgaagaag
cccgagaccatcaactaccgcacgttcaagcccgagcgcgatggtctgttctgcgccaag
atctttggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgtcgaagtgacccagaccaaggtgcgccgcgag
cgcatgggccacatcgacctggctgcgccctgtgcccacatctggttcctgaagtcgctg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtgaccgaccccggcatgaccccgctgaagaagttcagcatcatg
accgaggacgattacgaggccaagcgcaccgaatacggtgacgagttcgaagccaagatg
ggcgccgaaggcatcaaggatctgctcgaaggcatcgacatcgacgtcgagaccgagcgc
ctgcgcggcgatctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctgaag
ctgctggaagcgttcaagaagtccggcatcaagccgggctggatggtcatggaagtgctg
cccgtgctgcccccggacctgcgtccgctggtgccgctggacggcggccgcttcgcaacg
tccgacctgaacgacctgtatcgccgcgtcatcaaccgcaactcgcgtctgcgccgcctg
ctggagctgaaggctccggaaatcatcgcgcgcaacgaaaagcgcatgctgcaggaagcg
gtggactcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgt
gccctgaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccagaacttg
ctgggcaagcgcgtggactattcgggccgttccgtgatcacggtgggtccgtacctcaag
ctgcaccagtgcggtctgcccaagctgatggcgctggaactgttcaagcccttcatcttc
gcgcagctcgagcagcgcggcatcgccaccaccatcaaggcggcgaagaaggaagtcgaa
tccggcacgcccgtggtgtgggacatcctcgaagaggtcatcaaggagcacccggtcatg
ctgaaccgagctcccacgctgcaccgactgggcatccaggccttcgaacccatcctgatc
gaaggcaaggccatccagctgcacccgctcgtctgcgcggccttcaacgccgacttcgac
ggtgaccagatggctgtccacgttccgctgtcggtggaagcacagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttccccgcatcgggcgagccctccatcgttcct
tcgcaggacgtggtgctgggtctgtaccacgcaacgcgcgagcgcatcaacggcaagggc
gaaggcatgatcttcgccgacatcggtgaagtgcagcgcgcgctggactccgaccaggtc
gaactggccgccaagatcagcgtgcgtctgaccgagtggaccaagaacaaggactccggc
gagttcgagccttcgaccagcctggtggaaaccaccgtgggccgcgccctgatgtccgag
atccttcccaagggcctgccgttcagccacatgaacaaggcgctcaagaagaaggaaatc
tccaagctcatcaacgcctcgttccgcaagtgcggtctcaaggccacggtggtgtttgcc
gacaagctgctgcaaaacggcttccgcctgtccacgcacgccggtatctcgatcgccatc
ggcgacatgctggtgccgccgcaaaaggccgagatcatcggccgtgccgaagccgaggtg
aaggagatcgaacagcagtacgtctccggtctcgtgaccgctggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtctccaaggtcatgatggcccagctt
gccaaggaaaaggtcatcgaccgccacggcaacgaagtcgagcaggaatcgttcaacgcc
atttacatgatggccgactcgggcgcccgcggctcggccgcgcagatccgccagctggcc
ggcatgcgtggcctgatggccaagcctgacggctccatcatcgagacgcccattacggcg
aacttccgtgaaggcctgaacgttctgcagtacttcatctccactcacggcgcccgaaag
ggtctggccgacacggcgttgaagacggccaactccggctacctgacgcgtcgtctggtg
gacgtgacgcaggatctggtggtcaacgaggacgattgcggcacgaccaatggcgcactg
atgcgcgccatcgtcgaaggcggtgaagtgatcgagtcgctgcgcgaccgcgtgctgggc
cgtaccacggccgaggacgtcgtgcatcccgagacgctggccgtcctgctgcccgcaggc
acgctgctcaacgaagacgggatcgatgaactcgagttgcaaggcgtggacgagatcaag
gtccgcaccgcgctgaactgcgaaacccgctacggcctgtgcgccaagtgctacggccgc
gacctgggccgcggcggccagatcaacctcggcgaagccgtgggtgtgatcgccgcccag
tccatcggcgagcccggcacgcagctgaccatgcgtaccttccacatcggtggtgccgct
tcgcgcgctgccatcgcatcgagcgtggaagccaagtccaacggcgccatcagcttcaac
agcacgatgcgttacgtcagcaacaccaagggtgagctggtcgtgatttcgcgttcgggc
gaaatcgtcatcagcgacaatggccgcgagcgtgagcgccacaaggtgccttacggtgcc
gtgctgaccgtcaggcccgaccagcaggtcaaggccggtctgatcctggccaactgggat
ccgctgacccgacccatcattaccgagtacgccggccaggtgcgcttcgagaatgtggaa
gagggcctgaccgtggccaagcaggtcgacgaagtgaccggcctgtccacgctggtggtg
atcgatcccaagcgccgtggctctgccaaggtcgtgcgtcctcaggtcaagctgatcgat
gccaacaaccaggaagtcaagatccccggcaccgaccactcggtgacgatcggcttccag
gtcggcgctctgatccaggtgcgtgacggccaggacgtgggccccggcgaagtgctggcc
cgtatccctgtcgaaggccagaagacccgcgacattaccggcggtctgccccgcgtggcc
gagctgttcgaagcccgtacgcccaaggacaagggcacgctggccgagatgaccggcacc
atctccttcggcaaggaaaccaagggcaaggtgcgcatgcagatcaccgatctggatggc
aaggtctgggaagagctcgtgcccaaggaaaagaacatcctggtgcacgaaggccaggtg
gtcaacaagggcgagtccatcgtcgacggtcccgccgatccgcaggacatcctgcgcctg
ctgggcatcgaggagctgtcgcgctacatcgttgatgaagtgcaggacgtctaccgtctg
cagggtgtgaagatcaatgacaagcacatcgaggtgatcgttcgccagatgctgcgccgc
gtcgtggtcgagaacaccggcgattcgacctacatcgctggcgagcaggtcgagcgttcg
gaaatcctcaataccaacgaggccctgcagcgcgaaggcaagatccccgccacgtactcc
aacgtgctgctgggtattaccaaggcttcgctgtcgaccgactccttcatctccgccgcg
tcgttccaggaaacgacccgcgtgctcaccgaggctgccatcatgggcaagcgcgacgag
ctgcgtggcctgaaggaaaacgtcatcgtgggtcgcctgatccccgctggtacgggtctg
gcctaccaccaggcacgcaaggccaaggacgccatggacgacgcagagcgccgcgccatc
gccgacgccgaagcggccgaactggccggtgtgatggctgacgacgacgctggcgtggct
gccgtcgccggtgacgcttccgctgactga
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