Delftia sp. HK171: BO996_13140
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Entry
BO996_13140 CDS
T04584
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dhk
Delftia sp. HK171
Pathway
dhk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BO996_13140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dhk03400
]
BO996_13140
Enzymes [BR:
dhk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BO996_13140
DNA repair and recombination proteins [BR:
dhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BO996_13140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
AAA_30
IstB_IS21
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
APE48724
LinkDB
All DBs
Position
complement(2911809..2915303)
Genome browser
AA seq
1164 aa
AA seq
DB search
MELPKLTPGKRFTLPRPVGSADALLLARLGEREKAAGRVTAIVTADASDAQRLIDEMAFF
APGLRCALFPDWETLPYDSFSPHQDLISERLATLWRINQRDKEHGADVVLVPATTALYRL
APPSFLAGYTFEFKSGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPMGSL
QPYRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEDARAKFRQRWRELLEG
DPTRSRIYKDMGQGIATAGIEYYLPLFFDETATVFDYLGADATVVMHGDLEPAFQRFWQD
TKERFRLVQGDPERPALPPEVLFLSADQFYTRAKEHAQLALRPGTEDVADSAIFQKLEDL
SVVRGAEDPLARLQRHIASSAHRILLLAESDGRRESLLDFFRASGVNPPVFDSLAEFQGD
AGEKVGIATAGLMNGFAWVEEGLDFVTETELFATSPTGRRRRRQEQVSDVEALIKDLSEL
KVGDPVVHSDHGIGRYQGLVNMDMGQKNPDGTPAVQEFLHLEYAGNAVLYVPVSQLQLIS
RYTGVSPEDAPLHKLGGTQWEKAKRKAAEQVRDSAAELLNIYARRAARQGHAFRYSPQDY
EQFANDFGFEETADQRAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAITGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAVKGIADGSVDIVVGT
HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL
RDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRKQKLE
EILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSSNTILISRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDLDSLTKQAQQRLEAIQQMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMMEVGFQLYNEMLSEAVRSLKAGKEPDLLSPLSASTDINLHAPA
LLPNDYCGDVHLRLSFYKKLATARTSDQIDTLLEEIVDRFGKLPPQAQTLIDVHRLRVLS
QPYGVVKVDAAPGVINITFKPQPPVDPMAIIHLIQKNKHIKLAGNEKLRIERALDNPKDR
AQMVRDVLRSLGQPLVEAKAAQPA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaactgcccaagctcactcccggaaaacgcttcaccctgccccgccccgtgggcagc
gccgacgccctgctgctggcccgcctgggcgagcgcgagaaggctgctggccgggtgacg
gccatcgtcacggccgacgcctcggatgcccagcggctgatcgacgagatggccttcttc
gccccgggcctgcgctgcgcgctgttccccgactgggagaccctgccctacgacagcttc
tctccccaccaggacctgatcagcgagcgcctggccacgctgtggcgcatcaaccagcgc
gacaaggagcatggcgccgacgtggtgctggtgcccgccaccacggcgctgtaccggctg
gcgccgccctccttcctggccggctacaccttcgagttcaagagcggccagaagctggac
gaggccaaactcaaggcccagctgaccctggccggctaccagcatgtctcccaggtggtc
agccacggcgagtacgcggtgcgcggcggcctgatcgacctgtttcccatgggctcgctg
cagccctaccgcgtggatctgttcgacgacgagatcgactccatccgcaccttcgacccc
gacacccagcgcagcctctaccccgtgcccgaggtgcgcctgctgcccggccgcgagttc
cccatggacgaggacgcgcgcgccaagttccgccagcgctggcgcgagctgctggagggc
gatcccacgcgcagccgcatctacaaggacatgggccaaggcattgccacggccggcatc
gagtactacctgccgctgttcttcgacgaaacggccaccgtgttcgactacctgggcgcc
gatgccaccgtggtgatgcatggcgacctggagccggccttccagcgcttttggcaggac
accaaggagcgcttccgcctggtgcagggcgaccccgagcgcccggccctgccgcccgag
gtgctgttcctgtccgccgaccagttctacacgcgcgccaaggagcacgcccagctcgcg
ctgcgccccggcaccgaggacgtggccgacagcgccatcttccagaagctggaggacctg
tccgtggtgcgcggcgcggaagacccgctggcgcgcctgcaaaggcacattgccagcagc
gcccaccgcatcctgctgctggccgagtccgatggtcggcgcgaaagcctgctggacttc
ttccgcgcctcgggcgtgaacccgccggtcttcgactcgctggccgagttccagggcgat
gcgggcgagaaggtgggcattgcgacggccgggctgatgaacggctttgcctgggtggag
gaaggcctggacttcgtcaccgagacggagctgttcgccaccagccccacgggccgcagg
cgccgccgccaggagcaggtcagcgatgtggaggcgctgatcaaggacctgtccgaactc
aaggtgggcgaccccgtggtgcattcggaccacggcatcggccgctaccagggcctggtc
aacatggacatgggccagaagaaccctgacggcacgccggccgtgcaggagttcctgcac
ctggagtacgcgggcaacgccgtgctctacgtgcccgtcagccagttgcagttgatcagc
cgctacacgggcgtctcgcccgaggacgcgccgctgcacaagctcggcggcacgcagtgg
gaaaaggccaagcgcaaggcggccgagcaggtgcgcgactcggcagccgagctgctgaac
atctatgcgcgccgcgccgcacgccagggccatgccttccgctactcgccccaggactac
gagcagttcgccaacgacttcggcttcgaggaaacggcggaccagcgcgctgccatccac
gccgtgatccaggacatgatcagcccccagcccatggaccgcctggtctgcggcgacgtg
ggcttcggcaagaccgaggtggcgctgcgcgcggccttcgtggccatcacgggcggcaag
caggtggccttcctcgcgcccaccacgctgctggccgagcagcattaccagaccctggtg
gaccgcttctccaagtggccgatcaaggtggccgaagtctcgcgctttcgctcgggcaag
gagatcacggcggccgtcaagggcattgccgacggctcggtggacatcgtcgtgggcacg
cacaagctgctgtcggagtccacgcagttcaagaacctgggcctgctgatcatcgacgag
gagcaccgcttcggcgtgcgccacaaggaagccatgaaggccatgcgcgccgaggtggac
gtgctcacgctgacggccacgcccatcccgcgcaccatgggcatggcgctggaaggcctg
cgcgacctgtccgtcatcgccaccgcgccccagcggcgcctggccatcaagacctttgtg
cgcaacgagggcacgggcgtgatccgcgaggccgtgctgcgcgagctcaagcgcggcggc
cagtgctacttcctgcacaacgaggtcgagaccatcgagaaccgcaagcaaaagctcgag
gaaatcctgcccgaggcacgcattgccgtggcccacggccagatgcccgagcgcgagctc
gaacgcgtgatgcgcgacttcgtggcccagcgctacaacatattgctgtgctcgaccatc
atcgagaccggcatcgacgtgcccagctccaacaccatcctcatcagccgcgccgacaag
ttcggcctggcccagctgcaccagctgcgcggccgcgtgggccgcagccaccaccaggcc
tatgcctacctgatggtgcccgacctggacagcctgaccaagcaggcgcagcagcggctg
gaggccatccagcagatggaggaactgggctcgggcttctacctggccatgcacgacctg
gagatccgcggcgccggcgaggtgctgggcgagaaccagagcggcaacatgatggaggtg
ggcttccagctctacaacgagatgctgtccgaggccgtgcgcagcctcaaggccggcaag
gaacccgacctgctcagcccgctgtcggcctccaccgacatcaacctgcacgcgccggcc
ctgctgcccaacgactactgcggcgacgtgcacctgcgcctgtccttctacaagaaactg
gccacggcccgcaccagcgaccagatcgacaccctgctcgaagaaatcgtggaccgcttc
ggcaagctgccgccccaggcgcagacgctgatcgacgtgcaccgcctgcgcgtgctgtcc
cagccctacggcgtggtcaaggtggatgcagcgcccggcgtcatcaacatcaccttcaag
ccccagccacccgtggacccgatggccatcatccacctcatccagaagaacaagcacatc
aagctggccggcaacgagaagctgcgcatcgagcgtgccctggacaaccccaaggaccgt
gcccagatggtgcgcgacgtgctgcgcagcctgggccagccgctggtggaggcgaaggcg
gcccagcccgcatag
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