Delftia sp. HK171: BO996_13375
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Entry
BO996_13375 CDS
T04584
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dhk
Delftia sp. HK171
Pathway
dhk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dhk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BO996_13375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhk03019
]
BO996_13375
Enzymes [BR:
dhk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BO996_13375
Messenger RNA biogenesis [BR:
dhk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BO996_13375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
APE48762
LinkDB
All DBs
Position
complement(2964874..2966673)
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AA seq
599 aa
AA seq
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MTFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLSQGQVPRNKFGGKGIRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQ
IDRIKKGVDILVATPGRLLDLQQQGFMDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVP
KDKQSLLFSATFSDEIRDLANGLLRNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLLH
IINENNWSQVLVFTRTKFGANNVAEFLTKNNISAMALHGNKSQSARTQALAGFKTGELRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGREGHAVSLVCMDEEGFMM
DIERFTKQEIPVQVLEGFGPEEDEVAEPIAMGRQTIWGGAGKPPSRDVMQAAAKAARQEM
MDRIRTTKATQPDRGGRAGGRGQAPKAGSDEGRSEGNAGGQGRGRNHAGASANNKPRRDR
FDGPGNGSGAAHRPKAAPQNAPRRGPRPDGEGGGGVRRFDDQPPRADAHLGTQLGHARSS
GPRGSAGGGQPDPMRTSVDTMAERGRRGGFNRGGNGGGGGGGGFGGGGRGGPSRGGYGR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaactgaatctggctcccgccattctgaaggccgtgcttgaggagggt
tacgagaacccgactcccatccaggcacaggccatccctgcggtgctcgccggccacgac
ctgctggcaggtgcccagaccggcaccggcaagaccgctgccttcaccctgcccatgctg
caccgcctctcgcaaggccaggtgccgcgcaacaagttcggcggcaagggcatccgcgcc
ctggtgctgacgcccacgcgtgaactcgccgcacaggtcgaggaatcggtgcgcagctac
gccaagtacctggacatcaactccaccgtcatcttcggcggcgtgggcatgaagccccag
atcgaccgcatcaagaagggcgtggacatcctggtcgccacgccgggccgcctgctggat
ctgcagcaacaaggcttcatggacctgtccaccgtcgaagtcctggtgctcgacgaggcc
gaccgcatgctggacatgggcttcatccatgacgtcaagaaggtgctggccctggtgccc
aaggacaagcaaagcctgctgttctcggccaccttcagcgacgagatccgcgacctggcc
aacggcctgctgcgcaacccgcagtccatccaggtcacgcccagcaacaccaccgtgcag
cgcatcacccaggtgatccaccccgtgggccgcggcaagaaaaagcaggtgctgctgcac
atcatcaacgagaacaactggagccaggttctggtgttcacgcgcaccaagttcggcgcc
aacaacgttgccgaattcctgaccaagaacaacatcagcgccatggcgctgcacggcaac
aagagccagagcgcccgcacccaggccctggccggcttcaagaccggcgagctgcgcgcc
ctggtcgccaccgacatcgctgcacgcggcatcgatatcgacgagctgccgcacgtcgtg
aactacgagatccccaacgtgtccgaggactacgtgcaccgcatcggccgcacgggccgt
gccggtcgcgaaggccacgccgtcagcctggtctgcatggacgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcaggaaatccctgtgcaggtgctcgaaggcttcggcccc
gaagaggacgaagtggccgaacccatcgccatgggccgccagaccatctggggcggtgca
ggcaagccgcccagccgtgacgtcatgcaggccgccgccaaggctgcgcgccaggaaatg
atggaccgcatccgcaccaccaaggccacccagcccgaccgtggcggccgcgcaggtggc
cgtggccaggctcccaaggccggctcggacgaaggccgctccgaaggcaacgccggcggc
cagggccgtggccgcaaccacgccggtgcaagcgccaacaacaagccgcgccgcgatcgc
ttcgatggtccgggcaatggctccggcgccgcccaccgtcccaaggcagccccccagaac
gcccccaggcgcggcccgcgccctgacggcgaaggcggcggcggtgtccgtcgcttcgat
gaccaacccccgcgcgctgatgcccacctgggcacgcagctgggccatgcacgcagcagc
ggcccccgtggcagcgcaggtggcggccagcccgatccgatgcgcaccagcgtggacacc
atggccgaacgcggccgccgtggcggcttcaaccgcggcggcaatggtggcggcggcggt
ggtggcggcttcggcggcggtggccgtggcggcccctcgcgcggcggctacggtcgctga
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