Delftia sp. HK171: BO996_20610
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Entry
BO996_20610 CDS
T04584
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dhk
Delftia sp. HK171
Brite
KEGG Orthology (KO) [BR:
dhk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhk03019
]
BO996_20610
Enzymes [BR:
dhk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BO996_20610
Messenger RNA biogenesis [BR:
dhk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BO996_20610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
AAA_23
NACHT
nSTAND3
T2SSE
AAA_19
Cas3-like_C_2
AAA_25
SLFN-g3_helicase
PhoH
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
APE50058
LinkDB
All DBs
Position
complement(4676674..4680753)
Genome browser
AA seq
1359 aa
AA seq
DB search
MPLKISFPESLPVSARREEIMEAMDRHQVIIVCGETGSGKTTQLPKIALALGRGKVNATP
DDKGQVRGHLIGHTQPRRIAASSVAKRIAEELNTPLGDVVGYKVRFQDRLSKDASVKLMT
DGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYIKQILPRRPDLKVVVTSATIDA
DRFSRHFEGPKGPAPVIMVSGRTYPVEMRWRPFEEKRDHDLNDAIAEGVDELWSGGVSGD
ILVFLPGEREIREAADHLRKHLAQQPVLRHAEVLPLFSRLSQAEQDRIFDSHTGRRIVLA
TNVAETSLTVPGIRYVIDAGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGI
CIRLYDEADFGTRARFTDPEILRSSLAGVILRMKSLGLGDVVNFPFLESPSGRAIADGYQ
LLGELGAVDERGELLPMGRELSRLPLDPRVGRMILEARTRGAVAEVLVIASALSVQDVRD
RPLEAQQQADQQHAKFDDEKSEFSGYLRLWKWLQDARGGKVVAKSRKEMATAQAPAAKPS
ARNAAFLPVAQRSGGQSVAAPAAEALAAFHPQDTGPGTDDEPSHKLSNRQWEQLLRQNFI
NIRRVREWRDIHSQLLTVVNEHKWKINTEAAGYDAVHLSMLSGLLGNLGYKGDESDAYLG
ARGIRFYPHPGAHLSKKPGRWIVAAELVETSRLYGRGIAAIDPQWLEEVGAHLLKKQLLD
PHWSKNQADVVALERATLYGLVVYNGRRMSYGRIDPQSAREIFIRQALVEGQWDTRWHFL
PANLKLVRKVEELEHKSRRQDVLVDDELIYAFYDQQIPKDVFSGATFDHWFREAAKENAD
LLRLSRDELMRHEAAGITTQAFPKVVKLGGVDCTASYLHSPGDARDGITVTVPLFVLNQV
SDERVEWLVPGMLKDKLQALLKSLPQRPRSRFVPLPESAQRLAELFTTPERWGQGSLIDA
LLKQVRDETSLDVKRADFKLDMLSPHLFMNFRITDEHGRQLGQGRNLGALKAELGAKARG
AFQALAALKVASVTEASAPAATAATAPETGRKPAPAAKAEKPDQATPARNAKPSQPADSR
YKEWSFGELPELMEIGRGGQTLIGFPALIDHGDAVGIEVFDEPEVAAARHRVGLRRLFAL
QIRDALKYLEKNIPDLQKMAVAYMPLGTQEELREQIIDVAIDRAFLQEPLPTNDAQFKQR
VQDGRGRLTLIANEVARMASTILIEYAAAQRKIKDTKNAPDATADAAQQLQRLVPKNFIA
AAPWTQLQHYARYLKAITSRLDKYRADPARDASRLTELRPLEQRYWRLVAERKGHIDARM
QEYRWMLEELRVSFFAQELRTPYPVSIKRLDKVWQQLQN
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgaagatcagcttccctgaatccctgcccgtatccgcccgccgtgaggaaatc
atggaggccatggaccggcaccaggtcatcatcgtgtgcggcgaaacgggctcgggcaag
accacgcagctgcccaagatcgcgctggcgctgggccggggcaaggtcaacgccacgccc
gacgacaagggccaggtgcgcggccacctgatcggccacacgcagccgcgccgcattgcc
gccagctcggtggccaagcgcattgccgaggagctgaacacgccgctgggcgatgtggtg
ggctacaaggtgcgcttccaggaccggctgtccaaggacgcctcggtcaagctgatgacg
gacggcatcctgctggccgagacgcagaccgatccgctgctcaaggcctacgacaccctc
atcatcgacgaggcccacgagcgcagcctcaacatcgacttcctgctgggctacatcaag
cagatcctgccccggcgccccgacctcaaggtggtggtgacatcggccaccatcgatgcc
gaccggttctccaggcacttcgaaggccccaaggggcctgcgccggtgatcatggtctcg
ggccgcacctaccccgtggagatgcgctggcgccccttcgaggaaaagcgcgaccacgac
ctcaacgatgccatcgccgaaggcgtggacgagctgtggtccggcggcgtcagcggcgac
atcctggtgttcctgcccggcgagcgcgagatccgcgaggcggccgaccacctgcgcaag
cacctggcacagcagcccgtgctgcgccatgccgaggtgctgccgctgttctcgcgcctg
tcgcaggccgagcaggaccgcatcttcgacagccacacgggccggcgcatcgtgctggcc
accaacgtggccgagacctcgctgaccgtgcccggcatccgctatgtgatcgatgcgggc
acggcgcgcgtcaagcgctattccttccgcagcaaggtcgagcagctgctggtcgagccc
atcagccaggcggcggccaaccagcgcgcgggccgttgcggccgcgtggccaacggcatc
tgcatccgcctgtacgacgaggccgacttcggcacgcgcgcgcgcttcaccgaccctgaa
atcctgcgctcctcgctggccggcgtcatcctgcgcatgaagtcgctgggcctgggcgac
gtggtgaatttccccttccttgaatcgccctcgggccgcgccattgccgacggctaccaa
ttgctgggcgagctgggcgccgtggacgagcgcggcgagctgctgcccatgggccgcgag
ctgtcgcgcctgccgctggacccgcgcgtgggccgcatgatcctggaggcgcgcacgcgc
ggcgccgtggccgaggtgctggtcattgcctccgctctgtccgtgcaggacgtgcgcgac
cggccgctggaggcccagcagcaggccgaccagcagcacgccaagttcgacgacgagaaa
agcgaattcagcggctatctgcgcctgtggaaatggctgcaggatgcgcgcggcggcaag
gtggtggccaagagccgcaaggaaatggccacggcccaggcgccggccgccaagccatcg
gcgcgcaatgccgccttcctgcccgtggcccagcgcagcggcgggcagagcgtggccgcc
ccggcggccgaggcgctggcggccttccatccgcaggacaccggtcccggcacggatgac
gagccctcgcacaagctcagcaaccgccagtgggagcagctgctgcgccagaacttcatc
aacatccgccgcgtgcgcgaatggcgcgacatccactcgcagctgctgaccgtggtcaac
gagcacaagtggaagatcaacaccgaggccgcaggctacgacgccgtgcacctgtccatg
ctgtccggcctgctgggcaacctgggctacaagggcgatgaaagcgacgcctacctgggc
gcgcgcggcatccgcttctacccgcacccgggtgcccacctgtccaagaagccggggcgc
tggatcgttgcggccgagctggtggaaacctcacgcctgtacggccggggcatcgccgcc
atcgatccgcagtggctggaggaagtcggcgcccacctgctcaagaagcagctgctcgat
ccgcactggtccaagaaccaggccgacgtggtggcgctggagcgcgccacgctctacggc
ctggtggtctacaacggccgccgcatgagctatggccgcatcgatccgcagtccgcgcgc
gagatcttcatccgccaggccctggtggaggggcagtgggatacgcgctggcacttcctg
cccgccaacctcaagctggtgcgcaaggtcgaggagctggagcacaagagccgccgccag
gacgtgctggtcgatgacgagctgatctacgccttctacgaccagcagatccccaaggac
gtgttcagcggcgccaccttcgaccattggttccgcgaggcggccaaggaaaacgccgac
ttgctgcgcctgtcgcgcgacgagctgatgcgccacgaggcggccggcatcaccacccag
gcctttcccaaggtggtcaagctcggcggcgtggactgcacggccagctacctgcacagc
cccggcgacgcgcgcgacggcatcaccgtcaccgtgccgctgttcgtgctcaaccaggtc
agcgacgagcgcgtggaatggctggtgcccggcatgctcaaggacaagctccaggccctg
ctcaagagcctgccgcagcgcccgcgcagccgcttcgtgcccctgcccgaaagcgcccag
cgcctggccgaactcttcaccacgcccgaacgctggggccagggatcgctcattgatgcc
ctgctcaagcaggtgcgcgacgagacctcgctggacgtcaagcgcgccgactttaagctg
gacatgctcagcccgcacctgttcatgaacttccgcatcacggacgagcatggacgccag
ctgggccagggccgcaacctgggcgcgctcaaggccgaactcggcgccaaggcgcgcggc
gccttccaggcgctggccgcgctgaaggtggcgtcggtcacggaggcctctgcacccgct
gccaccgctgccaccgcgcccgaaaccggcaggaagcctgcgcccgctgccaaggcggaa
aagcccgaccaggccacgcctgccaggaatgccaagcccagccagcccgccgacagccgc
tacaaggaatggagctttggcgagctgcccgagctgatggagatcggccggggcgggcag
acgctgatcggcttccctgcgctgatcgaccacggcgatgccgtcggcatcgaggtcttt
gacgagcccgaggttgcggccgcacgccaccgcgtgggcctgcgccgcctgttcgcgctg
cagatccgcgacgcgctcaagtacctggaaaagaacattccggacctgcagaagatggcc
gttgcctacatgccgctgggcacgcaggaggaactgcgcgagcagatcatcgacgtggcc
atagaccgcgccttcctgcaggagccgctgcccaccaacgacgcccagttcaagcagcgc
gtgcaggacggacgcggccggctgacgctgatcgccaacgaggtggcgcgcatggcctcc
accatcctgatcgagtacgcggcggcgcaacgcaagatcaaggacaccaagaacgcgcct
gacgccacggccgacgccgcccagcaactgcagcgcctggtgcccaagaacttcatcgcg
gccgcgccctggacacagctgcagcactacgcgcgctacctcaaggccatcaccagccgc
ctggacaagtaccgcgccgaccctgcgcgcgacgccagccgcctgaccgagctgcgcccg
ctggagcagcgctactggcgactggtggccgagcgcaagggccacatcgatgcgcgcatg
caggaataccgctggatgctggaggagctgcgcgtgagcttcttcgcccaggagctgcgc
acgccgtacccggtcagcatcaagcggctggacaaggtctggcagcagctgcagaactag
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