Dermabacter hominis: CYJ49_000055
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Entry
CYJ49_000055 CDS
T09110
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
dhm
Dermabacter hominis
Pathway
dhm03030
DNA replication
dhm03430
Mismatch repair
dhm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CYJ49_000055
03430 Mismatch repair
CYJ49_000055
03440 Homologous recombination
CYJ49_000055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dhm03032
]
CYJ49_000055
03400 DNA repair and recombination proteins [BR:
dhm03400
]
CYJ49_000055
Enzymes [BR:
dhm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CYJ49_000055
DNA replication proteins [BR:
dhm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CYJ49_000055
DNA repair and recombination proteins [BR:
dhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CYJ49_000055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
DEDDh_C
RNase_H_2
DUF7508
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
WIK61831
LinkDB
All DBs
Position
complement(11236..12960)
Genome browser
AA seq
574 aa
AA seq
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MDVEFVVVDLETTGTNTELDAITEIGAVRVVGGEVVEEFQTFINPERPIPAYIAALTGIS
DHMVRDAPSAEAVIPAFLEFARTSVLVAHNARFDIGFLKASALRLDYRWPPFEVVDTLTL
ARRVFGRDEVKNHKLSTLAGAVGATTVPNHRALSDARATVDVLHEIIARLSAGGASHLSD
LTSSGKKASPTQIRKRHLAADIPPVPGVYSFVDANGSTLYIGKSGNLRSRVRTYFSPNET
RRAVLDIIPVTERIDIVQCSSDAEAAIRELRAIASERPIANRQGIRPSKGNWLRVTHDGL
RLARTVKSETSLHAYIGPLRSRHDVEPIRSLVYAALTAAIGAEDENAGAAEGRTGTESPT
VPREPSAAAGGLPVPPVHGPTFVAEPSEPVRSSAGFHARMHRALTEDPSDVFEYAAQKMR
ALVGRGLYENAEALRTRVELFADAARRAARLRSIAEVPFLVAARKISCHDASAQSPWQWE
VLAVRHGRLGAARTMPAWSDPLSAIEALARESEAEAALRAPLCFGYHHEAELILEWLAKP
GIRIVHVEGEWSMPSTARFTIEEFQRVFRRSAIR
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atcgacgtcgagttcgtcgtcgtcgacctcgagaccaccggaacgaataccgagctggat
gccatcacggaaattggcgccgtgcgagttgtgggtggcgaggttgtcgaggagtttcaa
accttcatcaacccagagcgcccgatccccgcatacattgctgcgctcacggggatctct
gaccacatggttcgcgatgcgccgtcggcagaagcggtcatccccgctttcctcgagttc
gcgcgcacctcggtgctcgtcgctcacaacgcacgcttcgacatcggttttttgaaggcg
tctgctcttcggctcgactaccggtggccccccttcgaggtcgtcgatacgctcacactc
gcgcgccgcgttttcggacgtgacgaagtgaagaaccacaagctttcgactctcgcggga
gcggttggggcaacgacggtgcccaaccaccgcgcgctgtcggatgcgcgcgcaacggtc
gatgttctccacgagatcatcgcgcgactttctgccggtggcgcaagccacctctcggat
ctcacctcaagcgggaagaaagcaagccccacccaaatccgcaaacgccacctcgcggcg
gacatcccgcccgtgcccggcgtgtactccttcgtcgacgccaacggctcaacgctgtac
atcggcaagtcgggcaatctccgctcgcgagtgcgcacctacttttcaccgaacgagacc
aggcgagccgtcctcgatatcattcccgtcaccgagcgtatcgacattgtgcagtgttca
agcgacgccgaagctgcaatccgcgagctgcgcgcaatcgcgagtgagcgccccatcgcc
aatcgccagggaatccgcccttccaagggcaattggcttcgagtcacccacgatgggctg
cgccttgcgcgcactgtgaaaagcgaaacgtcgctccacgcctatatcggcccgctccgc
tcgcgccacgacgtcgagccgattcgctccctcgtgtacgcggcactgactgcggccatc
ggggctgaagatgagaacgctggtgctgcggaaggtcgcaccgggaccgaaagtccgacg
gttccccgggaaccgtcggcagccgcgggtgggttgccggtgccgccggttcatggaccg
acgtttgtcgcagaaccgtcggagcccgtgcgcagcagcgcaggcttccacgcacgaatg
caccgggccctcaccgaggatccgagcgatgtttttgagtacgcggctcagaaaatgcgc
gcgctcgtggggaggggactctacgagaacgccgaggcgttgcgcacgagggtcgagttg
tttgctgatgccgcacggcgtgccgcacgattgcgatcgatcgcggaggttccattcctc
gtcgcggcgcgcaaaatctcgtgccacgatgcttcggctcaatcgccctggcagtgggag
gttcttgccgtacggcacgggcggctcggggcagcgcgcacaatgccggcgtggagcgac
ccactttcggctatcgaggcacttgctcgcgaaagcgaagcggaggccgccctgcgcgcc
ccgctgtgctttggctaccaccacgaggctgagctcatcctcgaatggctcgcgaaacct
ggcatccggatcgttcacgtggagggcgagtggtcgatgccgtcgaccgcccgctttacg
atcgaagagtttcagcgggtatttcgacgctctgcgatacgttga
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