Dermabacter hominis: CYJ49_001585
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Entry
CYJ49_001585 CDS
T09110
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dhm
Dermabacter hominis
Pathway
dhm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CYJ49_001585 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dhm03400
]
CYJ49_001585 (mfd)
Enzymes [BR:
dhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYJ49_001585 (mfd)
DNA repair and recombination proteins [BR:
dhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CYJ49_001585 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
AA_kinase
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WIK61082
LinkDB
All DBs
Position
complement(342798..346466)
Genome browser
AA seq
1222 aa
AA seq
DB search
MSIAPVLAAAAHSADLARFVEARSTTEGVSIIAPSGMHPLYLAEAASRRGPSDPLVVVTA
TTREAEDLAAQIEALVPAAKVALFPAWETLPHERLSPRSDTVARRLSTLYSLAHPDETGG
VEVLMVPVRALVQPMARGLENLAPVHLERGDFIAIDELVEKLVGAAYSRVDMVSSRGEFA
VRGGIVDVFPPTLSHPVRLDFFGDELEEIRFFSVADQRSMEDTLEAFDAPACREILLTED
VRARARAAIAQLPGAADILSRLAEGIAVEGMESLTPLLVGEMVSLADLLPEHSSLVFVEP
ERIRTRVDELVRTTEEFLEAAWSSAAQGGAVPIDVSQASFSSLEDTLGELEARRLPVSTL
APFGLDADLTSQAKPHPGYGGSIANAARDLAQHVSDGWRIVLTTAGAGTGRHIAESLTEA
GVTARFSADLDEELSRSHVSITTGPITEGILLEDIKLMLLCERDMTGKSAARRSGGKKLA
ARRRAMVDPLQLSPGDYVVHNHHGVGRFVEMTSRTVGTGDKRATREYLVIEYASSKKGQP
GDRLYVPSDQLDQVTKYVGGEAPSVNKMGGSDWSKTKSRARKAIREIADELVRLYSERQR
SSGFAFSPDTPWQHELEDAFEYTETPDQLSTIDDIKRDMEKPLPMDRLVCGDVGYGKTEV
AVRAAFKAVQDGKQVAVLCPTTLLAQQHVDTFTERYAGFPVNVRGLSRFQTKAESDAVIE
GLKDGSVDVVIGTHRLLTGQVRFKDLGLIIVDEEQRFGVEHKETLKALRTNVDVLSMSAT
PIPRTLEMAVTGIRELSTLATAPEERHPVLTYVGAHEDAQVKAAIRRELLREGQVFYIHN
RVEDIERTAVHLRELVPDARVEVAHGKLNEAQLERVILDFWEKRFDVLVCTTIVETGLDI
SNANTLIVENADRFGLSQLHQLRGRVGRSRDRAYAYFLYPATKPLTETAHDRLTTLATHS
ELGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVAAFKGEFDHTAKDT
KVELPLNAHIPVEYIDSERLRLEAYSKISASKSADELESVHSELEDRYGAPPAEVERLFH
VARFRLDASEAEIDEVQVQGKMIRFAHVDVTDSVQLKLRRLYPGTVLKPALRQVLVPHPR
TQRVGGIPLTDEALLEFCRGVIAQLKPAWAKERGIELAEQPSEPSRARSFGSRSPRASRL
ENSRRDAPQGTRQAGLGRKGHA
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatcgcccccgttctcgccgccgcggcgcactctgctgatctcgcacgcttcgtc
gaagcgcgttccaccaccgagggcgtatcaatcatcgccccgagcggcatgcacccgctt
tatcttgccgaggccgcttcgcgcaggggaccgtcggacccgctcgtcgtggtgaccgca
acgacgcgtgaagcagaagatcttgccgcccagatcgaagctctcgtcccggccgcgaag
gtcgcgctgttccccgcctgggagacccttccgcacgagaggctttcgccccgtagcgac
acggtcgcgcgcaggctttccacgctctattcactggcgcatccggacgaaacgggtggg
gtcgaggtgctcatggttcctgtgcgtgcactcgtgcagccgatggcacgcggacttgag
aatctagcgccggttcatctcgagcgcggcgacttcattgcgatcgacgagcttgtggag
aagctcgtcggtgcggcgtactcgcgcgtggacatggtctcctcgcgcggtgagtttgcg
gtgcgtggcggcattgtggacgtgttcccgccgacgctctcgcatcccgtccgcctcgat
tttttcggcgacgagcttgaagagatccgtttcttttccgtcgcggatcagcgctcgatg
gaggatactctcgaagcgttcgatgcacccgcgtgccgtgagattcttctgacggaggac
gtgcgcgcgagagcacgcgccgcgatcgcgcagctgcccggcgccgctgacatcctctcg
cggcttgcggagggcattgccgtcgagggcatggagtcgctgaccccgcttctggtgggg
gagatggtgagcctcgcggacctacttcccgagcattcgagcctcgtgttcgttgagccc
gaacgtattcgcacgcgtgtcgatgagctcgtgcgcacaacggaagagttccttgaggcg
gcgtggtcgagtgcagcgcagggcggtgccgtgccgatcgatgtgtcgcaggcaagcttc
tcgtcgctcgaagacacactcggcgagcttgaggcccgacgcctcccggtctccacgctt
gccccgttcgggctcgatgccgacctcacgtctcaagcgaagccgcaccctggatacggc
ggctcgatcgcgaatgcggcgcgcgacctcgcgcagcacgttagcgacggatggcgaatc
gtcctcacgaccgcgggagcgggtaccgggcgccacatcgccgagtcgctcactgaggcg
ggtgtcacggcgcggttcagcgctgatctcgacgaggagctttcccgctcgcacgtgagc
attacgaccgggccgatcaccgaggggatcctcctcgaggacatcaaactcatgctcttg
tgtgagagagacatgacggggaaatcggccgctcgccgatctggtggcaagaagcttgcc
gcacgtcgccgcgcgatggtcgatccgctccagctgtcgcccggagactatgtcgttcac
aatcaccacggagtcgggcggttcgtggagatgacgagccgcaccgtaggcacgggcgat
aagcgcgcgacccgcgagtacctcgtcatcgaatacgcaagttcgaagaagggccagccg
ggtgatcgcctctacgtcccgagcgaccagctcgaccaggtgacgaagtacgtcggcggc
gaggccccgagcgtgaacaagatgggcgggagcgactggtcgaagaccaagtcgcgtgcg
cgcaaggccatccgggagattgccgatgaactcgtgaggctctatagcgagcgccagcgc
agttcgggctttgccttttcgccagatacgccgtggcaacatgaactcgaggacgccttc
gagtacacggaaactcccgatcagctctcgacgatcgacgacatcaaacgggacatggaa
aagccacttcccatggatcgcctcgtgtgcggtgacgtcggctacggcaagaccgaagtt
gcggtacgcgcggccttcaaggctgtgcaggatggcaaacaggtggcggtcctatgccct
acgaccctgctcgcccagcagcacgtcgacaccttcacagaacggtacgcgggctttccc
gtcaacgtgcgtgggctttcgcgcttccaaaccaaggctgaatcggacgcggtgatcgag
ggactcaaggacggttcggtcgacgtggtgatcgggacgcaccgcttgcttacggggcag
gtgcgtttcaaggacctggggctcatcatcgtggacgaggagcaacgcttcggtgtcgag
cacaaggagactctcaaagcactgcgcaccaacgtcgatgtgctgtcgatgtcggcgacc
ccgattcccaggactctcgagatggccgtcacgggtatccgcgagctttccactctcgcg
acggcacccgaggaacgccatcccgtgctcacctacgttggcgcgcacgaggatgctcag
gtcaaggccgcgatccgccgcgaactcttgcgtgaggggcaggtgttctacatccacaac
cgcgtcgaggatattgagcgcaccgccgtgcacttgcgtgagctcgtgcccgatgcgcga
gtggaggttgcccacggcaagcttaacgaggcccaactcgagcgagtcatcctcgatttt
tgggagaagcgcttcgacgtactcgtgtgcacgacgattgtggaaacgggtctcgacatt
tcgaacgcaaataccctgatcgtggagaatgcggacagatttggtctctcgcagctacac
cagcttcgcggaagggtggggcgctcgcgcgatcgcgcctacgcgtacttcctgtatcca
gcgacgaagccgctcacggaaacagcgcacgaccgcctcacgacgcttgcgacgcactcg
gagctcggtgcaggcatgcaagtcgcgatgaaggacctcgagatccgcggcgcagggaac
ttgctcggcggcgagcagtccgggcacatagccggtgtgggctttgacttgtacgtgcgc
atggtcggcgaggcagtcgcagcgttcaagggcgaattcgaccacacggcgaaggacacg
aaggtcgaactgccccttaacgcgcacattcccgtcgagtacatcgattcagagcgcctt
cgcctcgaggcgtactcgaaaatttcggcgtcgaagagtgccgacgaactcgagagcgtg
cactccgagctcgaggaccgttatggcgcgccacccgcggaggtcgagcgtctctttcac
gtcgcgcgcttccgcctggatgcctccgaagctgagatcgacgaggtgcaggtgcagggc
aagatgatccgcttcgcgcacgtggacgtcacggacagcgtgcagctcaagctccgcagg
ttgtatccgggaacggtgctcaagcctgcccttcgccaggttctcgtcccgcatccgcgc
actcagcgtgtcggtggtattcccctcaccgacgaggccctgctcgagttctgccgcggc
gtgattgcacagctgaagcccgcatgggcgaaagaacggggtatcgagcttgccgagcag
ccgtcggaaccctcccgcgcgcgttcgttcggttcgcgatcaccgcgcgcaagtaggctc
gaaaactcacgtcgtgacgcgccgcaagggacgcgccaggcgggtcttggacgaaagggg
catgcgtga
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