Dermabacter hominis: CYJ49_008480
Help
Entry
CYJ49_008480 CDS
T09110
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dhm
Dermabacter hominis
Pathway
dhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYJ49_008480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhm03019
]
CYJ49_008480
Messenger RNA biogenesis [BR:
dhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CYJ49_008480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
WIK60467
LinkDB
All DBs
Position
1909880..1911571
Genome browser
AA seq
563 aa
AA seq
DB search
MTTPFSTTLGTPPQLKNKTLRVTPLGGLGEVGRNMTVFEYEGRLLIVDCGVLFPEEAQPG
VDLILPDFRSIEDRLDDVAAIVLTHGHEDHIGAVPYLLRLKPDIPLVGSQLTLAFVEAKL
REHRLKPYTLAVKEGDVEKFGAFECEFVAVNHSIPDALAVAIRTEAGTVLHTGDFKMDQL
PLDGRLTDLRAFARLGEEGVDLFLVDSTNAEVPGFTVKEREIGPVLDNLFARAQQKIVVA
SFSSHVHRVQQVLDSAHAHGRKVAFVGRSMVRNMTIAADMGYLNVPPNTLVDLKKADDIP
DHKIVYMCTGSQGEPMAALGRIANRNHRVEVGEGDIVILASSLIPGNENDVFRVMNGLME
LGAEVVHQANARVHVSGHASEGELLYCYNILRPKNVMPVHGEVRHLIANGKIAQSSGIPR
ENIVLAKDGTVVDLKDGVARVAGEVEVGYVYVDGSSVGEVSEADLKDRRILAEEGFISLF
AVVNSETGELIAGPEIHSRGIAEDDEVFERIKPDVIKALHKAIEDEKGHDTYQLQQAMRR
VVGRFLSQRLRRRPMIIPVVVEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
gtgactacacccttttccacgacactcgggaccccgcctcaactgaagaacaagactcta
cgtgtgaccccgctcggcggtctcggcgaagtcggccgaaacatgaccgttttcgagtat
gagggccgacttctcatcgtcgattgcggcgttctcttccccgaagaagcccagccgggc
gtcgaccttatcctcccggacttccgctcgatcgaggatcgccttgacgacgttgccgcg
atcgtgctcacacacggccacgaagaccacatcggtgcagttccctaccttctgcgcctc
aaaccagacatcccgctcgtcggtagccagctgaccctcgcctttgtcgaggcgaagctc
cgcgagcatcggctcaagccgtacacgcttgccgtgaaggagggggatgtcgagaagttt
ggcgcgttcgagtgcgaattcgtcgccgtgaatcactcgattcccgatgcgctcgcggtc
gcgatccgtaccgaggctggcacggtgctgcacacgggcgacttcaaaatggaccagctt
ccgctcgatggtcgcctgacggacctgcgtgccttcgcacgccttggcgaagagggcgtg
gatctcttcctcgtcgactcgacaaacgccgaggtcccgggcttcacggtcaaggaacgc
gagatcggccccgttctcgacaacctctttgcgcgtgcacagcagaagattgtcgtcgca
agcttctcgagccatgtgcaccgcgtccagcaggtgctcgactcagcgcatgcgcacggc
cgcaaggtggcgtttgtggggcgttcgatggtgcgcaatatgaccatcgctgccgacatg
ggctacctcaatgttcccccgaacacgctcgtggacctcaagaaggccgacgacattccc
gatcacaagatcgtgtacatgtgcacgggcagccagggcgagccgatggctgcgctcggg
cgtattgcgaatcgcaaccaccgcgtcgaagtcggcgagggggacatcgtgattcttgcg
tcctcgctcatcccgggcaatgagaacgacgtgtttcgcgtgatgaatggcctcatggaa
ctcggggccgaggtcgtgcaccaggcgaacgcgcgcgtgcacgtctcggggcacgcgagt
gagggtgagttgctgtactgctacaacattctgcgcccgaagaacgtgatgcccgtgcac
ggcgaggtgcgccacctcatcgcgaacgggaagatcgcgcagtcctcaggtatccctcgc
gagaacatcgtgctcgcgaaggacggcacggtcgtcgacctcaaagacggcgtcgcacgc
gtcgccggcgaggtcgaggttggctacgtgtatgtggacggttcgagtgtgggcgaggta
agcgaggccgatcttaaggaccgccgtattctcgcggaagagggcttcatttccctgttc
gccgtggtcaatagtgaaaccggcgagctcattgccgggccagagatccactcgcgaggc
atcgccgaggatgacgaggtgtttgagcgcatcaagcccgacgtcatcaaggcgctgcac
aaggcgatcgaggacgagaaggggcacgacacgtatcagcttcagcaggcgatgcgccgc
gtggtggggcgtttcctctctcagcgccttcgccgccgcccgatgatcatcccggttgtc
gtcgaggcttag
DBGET
integrated database retrieval system