KEGG   Dermabacter hominis: CYJ49_008480
Entry
CYJ49_008480      CDS       T09110                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
dhm  Dermabacter hominis
Pathway
dhm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dhm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CYJ49_008480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dhm03019]
    CYJ49_008480
Messenger RNA biogenesis [BR:dhm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CYJ49_008480
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL YicC-like_C
Other DBs
NCBI-ProteinID: WIK60467
LinkDB
Position
1909880..1911571
AA seq 563 aa
MTTPFSTTLGTPPQLKNKTLRVTPLGGLGEVGRNMTVFEYEGRLLIVDCGVLFPEEAQPG
VDLILPDFRSIEDRLDDVAAIVLTHGHEDHIGAVPYLLRLKPDIPLVGSQLTLAFVEAKL
REHRLKPYTLAVKEGDVEKFGAFECEFVAVNHSIPDALAVAIRTEAGTVLHTGDFKMDQL
PLDGRLTDLRAFARLGEEGVDLFLVDSTNAEVPGFTVKEREIGPVLDNLFARAQQKIVVA
SFSSHVHRVQQVLDSAHAHGRKVAFVGRSMVRNMTIAADMGYLNVPPNTLVDLKKADDIP
DHKIVYMCTGSQGEPMAALGRIANRNHRVEVGEGDIVILASSLIPGNENDVFRVMNGLME
LGAEVVHQANARVHVSGHASEGELLYCYNILRPKNVMPVHGEVRHLIANGKIAQSSGIPR
ENIVLAKDGTVVDLKDGVARVAGEVEVGYVYVDGSSVGEVSEADLKDRRILAEEGFISLF
AVVNSETGELIAGPEIHSRGIAEDDEVFERIKPDVIKALHKAIEDEKGHDTYQLQQAMRR
VVGRFLSQRLRRRPMIIPVVVEA
NT seq 1692 nt   +upstreamnt  +downstreamnt
gtgactacacccttttccacgacactcgggaccccgcctcaactgaagaacaagactcta
cgtgtgaccccgctcggcggtctcggcgaagtcggccgaaacatgaccgttttcgagtat
gagggccgacttctcatcgtcgattgcggcgttctcttccccgaagaagcccagccgggc
gtcgaccttatcctcccggacttccgctcgatcgaggatcgccttgacgacgttgccgcg
atcgtgctcacacacggccacgaagaccacatcggtgcagttccctaccttctgcgcctc
aaaccagacatcccgctcgtcggtagccagctgaccctcgcctttgtcgaggcgaagctc
cgcgagcatcggctcaagccgtacacgcttgccgtgaaggagggggatgtcgagaagttt
ggcgcgttcgagtgcgaattcgtcgccgtgaatcactcgattcccgatgcgctcgcggtc
gcgatccgtaccgaggctggcacggtgctgcacacgggcgacttcaaaatggaccagctt
ccgctcgatggtcgcctgacggacctgcgtgccttcgcacgccttggcgaagagggcgtg
gatctcttcctcgtcgactcgacaaacgccgaggtcccgggcttcacggtcaaggaacgc
gagatcggccccgttctcgacaacctctttgcgcgtgcacagcagaagattgtcgtcgca
agcttctcgagccatgtgcaccgcgtccagcaggtgctcgactcagcgcatgcgcacggc
cgcaaggtggcgtttgtggggcgttcgatggtgcgcaatatgaccatcgctgccgacatg
ggctacctcaatgttcccccgaacacgctcgtggacctcaagaaggccgacgacattccc
gatcacaagatcgtgtacatgtgcacgggcagccagggcgagccgatggctgcgctcggg
cgtattgcgaatcgcaaccaccgcgtcgaagtcggcgagggggacatcgtgattcttgcg
tcctcgctcatcccgggcaatgagaacgacgtgtttcgcgtgatgaatggcctcatggaa
ctcggggccgaggtcgtgcaccaggcgaacgcgcgcgtgcacgtctcggggcacgcgagt
gagggtgagttgctgtactgctacaacattctgcgcccgaagaacgtgatgcccgtgcac
ggcgaggtgcgccacctcatcgcgaacgggaagatcgcgcagtcctcaggtatccctcgc
gagaacatcgtgctcgcgaaggacggcacggtcgtcgacctcaaagacggcgtcgcacgc
gtcgccggcgaggtcgaggttggctacgtgtatgtggacggttcgagtgtgggcgaggta
agcgaggccgatcttaaggaccgccgtattctcgcggaagagggcttcatttccctgttc
gccgtggtcaatagtgaaaccggcgagctcattgccgggccagagatccactcgcgaggc
atcgccgaggatgacgaggtgtttgagcgcatcaagcccgacgtcatcaaggcgctgcac
aaggcgatcgaggacgagaaggggcacgacacgtatcagcttcagcaggcgatgcgccgc
gtggtggggcgtttcctctctcagcgccttcgccgccgcccgatgatcatcccggttgtc
gtcgaggcttag

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