Dermabacter hominis: CYJ49_009335
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Entry
CYJ49_009335 CDS
T09110
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dhm
Dermabacter hominis
Brite
KEGG Orthology (KO) [BR:
dhm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhm03019
]
CYJ49_009335 (hrpA)
Enzymes [BR:
dhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CYJ49_009335 (hrpA)
Messenger RNA biogenesis [BR:
dhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CYJ49_009335 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
T2SSE
SLFN-g3_helicase
AAA_30
nSTAND3
HA2_N
FtsK_SpoIIIE
AAA_23
ResIII
PhoH
AAA_11
SRP54
ABC_tran
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WIK60624
LinkDB
All DBs
Position
2089962..2093882
Genome browser
AA seq
1306 aa
AA seq
DB search
MTSSNENTGARPGRAKPRLAITYPADLPVSQRREEIQRAIRDNQIVIVAGETGSGKTTQL
PKMLLELGYGGRGRMIGHTQPRRIAARSVASRIAEELGEKLGEGSVGYQVRFTKNTATST
RLKVMTDGILLSEIHGDRLLKKYDAIIIDEAHERSLTIDMLLGYLKRIARRRPELKIIIT
SATIDPERFAEFFGKKDRAGDLHPAPIIEVSGRTYPVEVRYRPLVLEPEIDEVDELADIR
SEERDLTEAIVDACDELIAEGPGDILVFLPGEREIREVGEELQTHVKKRVGAASRIDVLP
LFGRLSEQDQQKIFSLPKDGRRRIVLATNVAETSLTVPGIKYVVDSGLARISRYSQRTKV
QRLPIEPISQASAKQRSGRSGRTSPGIAIRLYSEQDFDTRPEFTEPEILRTALASVVLQM
TALGLGDIESFEFVEAPDKRAVRDGVRLLEELGAIRSEKNAPGGRALTAIGEQISRFPLD
PRMARMLLEADKRGALREVLVIVAALSIQDPRERPLEKKAQADQLHARFTHDTSDFLTYL
NLWRHLRERRKALSNSAFKREVKSEYLHYVRIREWWDLHAQLKDMCRDVGLRPSDNPASE
ATIHQSLLAGLLSHVGLYDERTRDYQGARNSRFVIWPGSTIARKRHDYVMAAELVETSRL
FARTAAKIDPAWIEDVGPHVMKRSYSEPHWSSKKASAMAYEKATLFGVPIFARRTVAYGR
IDPELSREIFIQHALIEGQWNTRHHFFRDNVRLIEELEELENKARRRDLIAGDAALFEFY
DARIPAKVTSGRHFDAWWKKQRHETPELLHLTREILLEDDAEDQAAGFPDTWVQGDITLA
LRYTFEPSARGACDGDQPKSTAHFKDGVTALVPLAVLGRLEPKGFDWLVPGMREEKIAEL
IRTLPKPIRRHLIPAPDKARAVAQILRDDDPNTGERFVEAVADELVALPGVPDDLPLYGD
EFDASKLPAHLRMHFSVRDDRGREIGSGDDLLALKKAHHARVESSAARQAESFGDRDLDG
FPDFEIPRTKRNRQGGLNVVVYPALKLREDSGGVSVDLTAMPTALDQRREHVRAVTHLVT
ETLGSNSAQVLGSLPNPTKLAISQSSYGSAKALLSDAALAASAELISRTENGGLVWTKAE
FDALVEAVRAEHAGLSRTLVLAAVDALALHAKLQRAVSKVSSLSVLQQLTQIREHADSLT
SGRFISRTPAHIVPEIPRYLKADIHRIEKMQDNPARDAQLAWQIEDLAGMFEKAKSKISA
ETLESEEAREIPWMLEELRVSFFAQQLGTRYTVSEKRVRRAIADLR
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgacctccagcaacgagaacactggcgcgcgccccggcagggcgaagccgcgccttgcg
atcacctaccccgctgaccttcccgtctctcagcggcgtgaggaaatccagcgagcgatt
cgcgacaaccaaatcgtgatcgtcgctggcgagacaggttccggcaaaaccacgcagctt
ccgaaaatgctcctcgaactcggctacggtggccgcggtcgcatgatcggtcacacgcag
ccccgaaggatcgccgcccgaagcgtcgcgagtcgcatcgcggaggaattgggcgagaag
cttggcgagggaagcgtcggataccaggtgcggtttacgaaaaacaccgccacatccacg
cgcctcaaggtcatgaccgacggcatcctcctctcggagattcacggcgacaggctgctg
aagaaatacgacgccatcatcatcgacgaggctcacgagcgcagtctcacgatcgacatg
ctgctcggctacctcaagcgcattgcccgccgtaggcccgagctgaaaatcatcattacc
tcggcgacaatcgaccccgagcgcttcgccgagttcttcggaaagaaggatcgcgcgggc
gacctgcaccccgcccccatcatcgaggtgtcgggccgcacctaccccgttgaggtgcgc
taccggccgctcgtcctcgagcccgagatcgatgaggtggacgaactcgcagacatccgc
agcgaggagcgtgacctcaccgaggcaatcgtcgatgcgtgcgatgaactgatcgccgag
gggcccggcgacatccttgtgtttctcccgggtgagcgtgagatccgcgaggtgggagag
gagctccaaacgcacgtgaagaaacgggtgggggcggcgagtcgaatagacgttctgcct
ctctttggccgtctctcagagcaggaccagcagaagatcttcagcctgccgaaagacgga
cgtcgtcggatcgttctcgcgacgaatgtcgcggaaacctccctcaccgttccgggcatt
aaatacgtcgtcgactcgggcctcgcccgcatttcacgttactcgcagcgcacgaaggtg
cagcggctcccgatcgagccgatcagtcaggcgagtgcgaagcagcgttctggtcgatcc
gggcgaacgagccccggcatagcgattcgcctctattccgagcaggatttcgacacgcgg
cccgagttcaccgaaccagaaattcttcgtacggcccttgcgagcgtcgtcctgcagatg
accgctcttgggctcggcgacatagagagcttcgagttcgttgaagcccccgataagcgc
gcggtgcgtgatggcgtgcgcctcctcgaggagctcggtgcgattcgcagcgagaagaat
gcccccggtggacgagcgctcacggcgatcggcgagcagatctcgcgttttccgctcgac
ccgcgtatggcgcgcatgctcctcgaagctgataaacgcggtgcactccgcgaagtcctc
gtgatcgtcgccgcgctctcgattcaggatccgcgcgagcggcccctcgagaagaaagcg
caggcggatcagctgcacgcgcgtttcactcacgacaccagtgactttctcacctacctc
aacctctggcggcacttgagagagcgccgcaaggcgctctccaactcggcattcaagcgc
gaagtcaaaagcgagtacctgcactacgtgcgtatccgcgaatggtgggacctccacgcg
caactcaaagacatgtgccgcgacgtggggctgcggccgtcggataacccggcgagcgag
gcgaccatccaccaaagcttgctggccgggcttctgagccacgtggggctctatgacgag
cgcacgcgcgactaccagggtgcgcgcaattcgcggttcgtgatctggcccggaagcacg
atcgcgagaaaacgccacgattacgtcatggccgcggaactcgtggaaacatcacgcctg
ttcgcccgcacggccgcgaagatcgatcccgcgtggattgaggacgtcggccctcacgtc
atgaagcgcagctactccgagccgcattggagctcgaagaaggcaagcgcgatggcgtac
gaaaaagcgacactgttcggcgtcccgattttcgcgcgcaggaccgttgcctacggccgc
atcgatcccgaactttcgcgcgagattttcattcaacatgccctcatcgaggggcagtgg
aacacccgccaccacttctttcgcgacaatgtgcgactcatcgaggaactcgaagagctt
gaaaacaaggcgcggcgcagggacctcatcgcgggcgacgccgcactgttcgagttttat
gacgcgcgtatccccgcgaaggtgacgagcgggcggcacttcgatgcgtggtggaagaag
cagcgtcacgaaactcccgagctcttgcatctcactcgtgagatcctgctcgaggacgac
gcggaggaccaggccgcaggcttccctgacacgtgggtgcagggggacatcacgctcgcg
cttcgctatacattcgagccttcggctcgaggtgcctgcgacggtgaccagccgaaatcg
acggcccacttcaaggatggtgtcacggccctcgttcccctcgccgtgctcggcaggctc
gagccgaagggctttgattggctcgtgcctggcatgcgcgaggaaaaaattgccgagctc
attcggaccctcccgaagccaattcgccgccacctcatccccgcgccggacaaggcacgc
gccgtcgcccagatcctgcgcgacgacgacccgaatacgggtgagcgctttgtcgaagct
gttgccgacgaactcgtggcacttcccggtgtccccgacgacctgccgctctacggcgat
gaatttgatgcgagcaaacttcccgcgcaccttcgcatgcatttctcggttcgcgatgat
cgcgggcgcgagatcggctcgggcgatgaccttctcgcactcaagaaggcacatcacgca
cgtgttgaatcaagcgcggcccggcaagccgagtcctttggcgaccgcgatctcgatggg
tttcctgacttcgagattccccgcacgaaacgcaaccggcaaggtgggctcaatgttgtc
gtgtatcccgcgctcaaactccgcgaggatagcggcggtgtgagtgtcgacctcaccgcg
atgccgactgccctcgatcagcgccgcgagcacgtccgtgccgtgacgcacctcgtgacc
gaaactctcgggtcgaactctgcgcaggtgctcggctcgctcccgaatcccacgaagctc
gcgatttctcaatccagttacgggagcgcaaaggcgcttttgagcgatgcggcgctcgcc
gcgagcgccgagttgatttcccgaacggaaaacggcggtcttgtgtggacgaaggctgaa
ttcgacgcgctcgtcgaggccgtgcgtgccgagcacgctggcctttcacgcacgctcgtg
ctcgccgccgtcgacgctctcgcccttcacgcgaagcttcagcgggccgtctccaaagtt
tcgagcctctcggtgctgcagcaactcacccaaatccgcgagcacgccgactcgcttacc
tccgggaggttcatttcgcgcacgcctgcgcacatcgttcccgagattcctcgctacctg
aaggcagacatccacaggatcgagaaaatgcaggacaaccctgcgcgcgatgctcaactt
gcgtggcagatcgaggatcttgccggcatgttcgagaaggcgaaatcgaaaatctcggca
gaaacgctcgaaagcgaagaggcgcgcgagattccctggatgctcgaagagctgcgagtc
tcgttctttgcgcagcaacttggaacgcggtacacggtttcggaaaagagagtgcgccgc
gcgatcgcggatcttcgctaa
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