Dermabacter hominis: CYJ49_010305
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Entry
CYJ49_010305 CDS
T09110
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dhm
Dermabacter hominis
Pathway
dhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYJ49_010305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhm03019
]
CYJ49_010305
03009 Ribosome biogenesis [BR:
dhm03009
]
CYJ49_010305
Enzymes [BR:
dhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYJ49_010305
Messenger RNA biogenesis [BR:
dhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CYJ49_010305
Ribosome biogenesis [BR:
dhm03009
]
Prokaryotic type
rRNA helicases
CYJ49_010305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Flavi_DEAD
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WIK60797
LinkDB
All DBs
Position
complement(2294579..2296477)
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AA seq
632 aa
AA seq
DB search
MTTDNRNDTEIALENREEVAEALEMDGMAQAGTSAADGGTDTDTPKETTNDERMRFDELG
LPPELLAAVHDLGFTHPSPIQERAIPALLEGRSVLGVAQTGTGKTAAFGLPLLAEIRASN
RSTQGLVLAPTRELAMQVADAIQSFAAKLDGVNVVSVYGGAPYGPQERALERGAHVIVGT
PGRVIDHLKRGNIVLDDLSTLVLDEADEMLRMGFAEDVDEILGFAPKQKRMALFSATMPP
AIKRVAEEHMPDAVSVAVARQSTTVTSVDQKYAVVPFRHKTGALTRIVKTTDADATIVFV
RTRSAAEEVGTALIARGIVAATISGDVPQKERERIVERLRDGSLTVLVATDVAARGLDVE
RIGLVVNFDIPSEPEAYVHRIGRTGRAGRTGQAITFVAPHEKRKLRNIERTTRQELEEVQ
IPSPLDVSRHKMKKVLSEVPARLEKGRLNLYYDLLNEFLSENNVSIEQVAAALGAMTVGD
DGPRASDDEFTGASFRDKGGKGDRGDRKERADRGDHNRGEKRPRRSSAGFTTYRIAVGKN
NGVRPQAIVGAIAGEGGLNGQDVGKIDLFPSFSLVELRDGVDEAALARIGRARVGGKPMR
IQVDQGPKKGGKFKTRKGKRFEDRGAKKSNRW
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgacaaccgcaacgacacggaaatcgccctggaaaaccgcgaagaagtcgcg
gaagcgctcgaaatggatggcatggcgcaggccggtacatccgccgccgacggcggcacg
gatacagacacccccaaagaaacaaccaacgacgagcgcatgcgcttcgatgaactcggc
cttccgccggagcttctcgcggccgtccacgacctcgggttcacgcatccctcccccatc
caagagcgcgccatccccgcactgctcgaagggcgaagcgtcctcggcgtcgcccagacc
ggtacgggtaaaaccgccgcgttcggtctgccgctgctcgctgaaatccgagcatcgaac
cgctcaacccagggactcgttcttgccccaacgcgagaactcgccatgcaggtggccgat
gcaatccaatccttcgccgcgaagctcgatggcgtgaacgtcgtgagcgtgtatggcggc
gccccgtacggcccgcaggaaagagcgctcgagcgcggcgcccatgtcattgtcggcacg
cccgggcgcgtcatcgaccatctcaagcgcggcaatatcgtgctcgacgacctctcaaca
ctcgtgctggacgaggccgatgaaatgctccgcatgggcttcgccgaggacgtcgacgaa
atcctcggtttcgccccgaagcagaagcgcatggcacttttcagcgcaaccatgcctccc
gcgattaagcgcgttgcggaggagcacatgcccgatgcggtcagcgtcgccgtcgcccga
cagtcgacgaccgtcacgagcgtcgaccagaagtacgcggtcgtgccgttccgccacaag
acgggtgccctcactcgcatcgttaagacgacggatgccgatgccacgatcgtgtttgtg
cgcacgcgtagcgcggccgaggaagtaggaacggcgctcattgctcgcggcatcgtggct
gcgaccatctcgggcgacgtcccacaaaaggagcgcgagcgtatcgtcgagcgcctgcgc
gacggttcactcacggtcctcgtcgcgaccgacgttgccgcccgaggtctagacgtcgaa
cgcatcggcctcgtggtcaattttgacattccctcagaacccgaggcatacgtccaccgc
attggccgcactggccgcgctggccgcacggggcaggcgatcactttcgtcgcacctcac
gaaaagcgaaagctgcgcaacatcgagcgcacgactcgtcaggaactcgaggaagtgcag
atcccctcgccgctcgacgtctcgcgccacaagatgaagaaggtgctgagtgaggtaccc
gcgcgtctcgagaagggacgcctcaacctgtactacgacctcctcaacgagtttttgagc
gaaaacaatgtgtcgattgaacaggtagcagcggcgctcggtgcgatgacggtcggcgac
gacggcccacgcgcgagcgatgatgagttcacgggtgcaagcttccgcgataagggaggc
aagggagatcgcggcgatcgcaaagaacgtgccgatcggggagatcacaaccgtggcgag
aagcgcccacgccgctcgagcgctggcttcacgacctaccgcatcgcagtcggtaagaat
aacggcgtgcgcccgcaggcaatcgttggggcgatcgccggcgagggcggactcaatggt
caggatgtcggcaagatcgatctcttcccctcgttctcgctcgtcgagcttcgcgatggc
gtcgacgaggcagcgctcgcccgcattggccgcgcacgcgtgggcggcaagccgatgcgt
attcaggtcgatcagggtccaaagaagggcggaaaattcaagacccgtaagggcaagcga
ttcgaggaccgcggcgcgaagaagtccaatcgctggtaa
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