Dissulfurimicrobium hydrothermale: LGS26_04325
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Entry
LGS26_04325 CDS
T07882
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dhr
Dissulfurimicrobium hydrothermale
Pathway
dhr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dhr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LGS26_04325 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dhr03021
]
LGS26_04325 (rpoC)
03400 DNA repair and recombination proteins [BR:
dhr03400
]
LGS26_04325 (rpoC)
Enzymes [BR:
dhr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LGS26_04325 (rpoC)
Transcription machinery [BR:
dhr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LGS26_04325 (rpoC)
DNA repair and recombination proteins [BR:
dhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LGS26_04325 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UKL14465
LinkDB
All DBs
Position
887838..891920
Genome browser
AA seq
1360 aa
AA seq
DB search
MEDLLSFFSKPKDPLNFKAVRISIASPEKMLERSFGEVKQPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKHRGVICEKCGVEVIQAKARRERMGHISLAAPVAHIWFLKSL
PSKIGALLDLSLKELERVLYFESHIVLSSQVPELAVGTILSEELYTKNLDLYGSKFEVGI
GAEAIQMLLARIDLDSLSRELRDEMIKTKSEAKRKKLGKRLRVIEAFKDSGNRPEWMILN
VIPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELDAPDIIVRNEKRMLQ
EAVDVLFDNGRRGRVVTGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRTVIVVGPE
LRLHQCGLPKRMAIELFKPFIYNKLEEKGLVTTIKSAKKMVEKEVPEVWDALDEVVKEYP
VMLNRAPTLHRLGIQAFEPILVEGKAIHLHPLVCTAYNADFDGDQMAVHLPLSVEAQTEA
RVLMMSTNNILSPAHGEPIIQASQDIVLGIYYMTRERPGVKGEGKIFASKEEVIQAWDAS
IVHLQAKIKARIRDELVETTVGRVILSDILPEYVPFSYINKVMRKKDINKLIDISYRLAG
AKQTIILADALKNMGYRFATLAGISICINNLAVPVRKEEILEKAQEAVSEVDRQYKEGLL
TESERYNNVIDIWTRATDEVASEMMEGISVEYHRNANGEVVSSPSFNPVFIMADSGARGS
KDQIRQLAGMRGLMAKPSGEIIETPIKANFREGLSVLEYFISTHGARKGLADTALKTANS
GYLTRRLVDVAQDSTIYEEDCGTIDGIEMEHLIEGGEIIQRLGERILGRVALMDIVDPVT
GEVLVKANEEIDEDAVVKIEDAGISRVEIRSVLTCRSPYGVCAKCYGRDLARGRMVAIGE
AVGIIAAESIGEPGTQLTMRTFHIGGAAGGKVEQADIRARGGGVVRYERISAVRNPAGRM
VVLNRNGELVIMSHDGRERERYPVIYGAELLVEDGAAVEPGQKLAEWDPFTNPILVEVSG
KVKFGDLIDGVTIEEKVDQLTGRASRVVIQHRSSDYTPRISIKDERGRTLKLPSGKGDAR
YLLPVGAIVVANEGDEIRAGEIIAKIPRETTKTKDITGGLPRVAELFEVRKPKEYAIISE
IDGVVSFGKDLKGKRRVIITPEVGEPKEYMIPKGKYINAHEGDYIRAGEPLMDGVINPHD
LLRVKGIKALARYMVNEIQEVYRLQGVKINDKHIEVIVRQMVRRVKITSVGDSTFMLGEQ
VERYRFEEENEKLIAEGRQPATAEPMLLGITRASLTTDSFISAASFQETTKVLTDASIAG
KIDYLRGLKENVIMGRLIPAGTGRVFYDEKECRRAAAATS
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggaagatctcctttcttttttttcaaaaccgaaagatcctttaaattttaaggcggtc
aggatatctatagcctcacccgaaaagatgctcgagaggtcttttggtgaggttaagcag
cctgagaccataaattatcgtacctttaagcctgaaagggatggccttttctgtgccagg
atattcggtcctataaaggactatgagtgcctgtgtggcaagtacaaacgaatgaagcac
aggggtgtaatctgcgagaaatgtggcgtagaggtcattcaggcgaaggctaggcgcgaa
cgtatgggccacataagccttgccgcccctgtggcgcatatatggtttttaaagagcctt
ccgagcaagattggcgcccttcttgaccttagtctcaaggaactggaaagggtcctgtat
tttgaatcccatatagtgctctcttcccaagtgcctgaacttgctgtgggcaccatatta
tcagaggaactttacacaaaaaaccttgatctttacggctccaagtttgaagtaggtata
ggtgcagaggccatccagatgctccttgcaaggatagatctcgattccctttcaagggag
ctgagagacgagatgatcaagaccaagtcggaggcgaaacgcaagaagctcgggaagcgc
ttgagggtgatagaggcctttaaagactcgggcaaccgacctgaatggatgatacttaat
gtcatccctgtgcttccgccggacttgaggccccttgttccccttgacggtggacgcttt
gctacatctgacctcaatgatctatatagaagggtcataaacagaaacaaccgcctcaag
aggctccaggagctcgacgcccctgatatcatcgtgcgtaacgagaagaggatgctccag
gaggcggttgatgtactgttcgacaatggacgcagagggcgtgttgtgactggtcccaac
aaaagacctcttaagtccctttctgacatgctgaaggggaaacagggacgtttcagacag
aatctccttggcaagcgtgtcgattattcgggccgcacagtaattgtcgttggtcccgaa
ctgagactgcaccagtgtggccttccaaaacgtatggcgattgagctttttaagcccttc
atctacaataaacttgaagaaaagggccttgtgaccactataaagagtgcgaagaagatg
gtggaaaaagaggttccagaggtctgggacgccttggatgaggtggtgaaggaatatccc
gttatgttgaacagggcacctacattgcacaggctgggtattcaggcgtttgagcctatt
cttgtcgagggtaaggccattcacctgcacccactagtctgtactgcatacaatgcagac
tttgacggcgaccagatggcggtccatctgcctctgtctgtcgaggcccagaccgaggca
agggtacttatgatgtccaccaacaacatactttcgcccgcgcacggtgagcctattata
caggccagtcaagacattgtgctcggtatctattatatgaccagggaacggccaggcgta
aagggtgagggcaagatatttgcttcaaaggaagaggtgattcaggcctgggatgccagc
atcgtgcacttgcaggcgaagatcaaggcaagaattagggacgagcttgtagagaccacc
gtaggaagggtgatattgtctgacatcctccctgaatatgtgccattttcatatattaat
aaagtaatgcgtaaaaaggatataaacaagcttattgatataagctacagacttgctggt
gccaagcagaccatcatattggctgacgccttgaaaaatatgggttacaggttcgctaca
ttggcaggcatttctatttgcataaacaatctcgccgtgcctgtgcgcaaggaagagata
cttgagaaggcccaggaagccgtttcagaagttgataggcagtacaaggaaggtctgctt
acggagagcgagagatataataatgttatagatatctggacaagggctactgacgaggtc
gcctcagaaatgatggaaggtatctccgttgagtaccatcgcaacgctaatggtgaggtg
gtttcatcaccaagctttaatccggttttcatcatggctgattcaggtgcaaggggtagc
aaggaccagataaggcagcttgccggtatgcgtgggttgatggctaagccgtccggcgag
atcattgagacgcctataaaggccaatttccgtgagggtttgagcgtgcttgaatatttt
atctctactcacggcgcaagaaagggtcttgcagatacggcgctgaagacagccaattcc
ggctatctgactagaaggctcgttgatgtggcccaagactctacgatatatgaagaggat
tgtggtaccattgatgggattgagatggagcatcttatagagggcggtgagatcatacag
cgtctcggagaacgcatattgggtcgtgtagccctcatggatattgtggatccggttact
ggcgaggtattggtcaaggccaatgaggagatagatgaagatgctgtagtcaagatagaa
gacgccgggatctccagggttgagatcaggtcggttcttacctgtcggtcgccttatggg
gtgtgcgctaagtgttacgggcgtgaccttgcaagagggcgcatggtagctattggtgag
gctgtaggtattatagccgcagagtcgatcggagaacctggtacacagcttaccatgagg
acattccatataggtggcgcagctggtggcaaggtcgagcaggcggatatcagggcaaga
gggggtggagtcgtgcgttatgaaaggattagcgcggtgcgcaatcctgcagggcgcatg
gtggtgctaaacaggaacggcgagctggtgatcatgtcacatgacggcagggagagggag
cgttatccagtaatatacggggcagagctattggttgaagatggggcggctgttgagccg
ggtcaaaagttggctgagtgggatccgtttacaaacccaatccttgtagaggtgtctgga
aaggtgaaattcggggatcttatagatggggtcactatagaagaaaaggtggatcagctt
acgggtagggcgagtcgtgtggttatacaacatcggtcttccgactatacgcctcgaatt
tcgattaaggatgagcggggaaggacattgaagttgccaagcggcaagggagatgcccgc
tatcttcttccggttggtgccatcgttgtagcgaatgagggtgacgagatcagggctgga
gagattattgcaaagatacctagggagacgacaaaaacaaaggatattacaggaggtctt
cctagggttgcggagctctttgaggtgagaaagccgaaggaatatgcgattatatccgag
atagacggtgttgtgtctttcggtaaggacctaaagggcaaacggcgtgtgatcattacc
cctgaagtcggcgaacccaaggaatacatgataccgaaaggcaagtatataaatgcccac
gaaggtgactatatacgtgcaggcgaaccactaatggatggcgtaatcaatccgcacgat
ctcctgagggtcaagggtataaaggccttggcccgttatatggtaaatgagatccaagag
gtctatcggctgcagggtgtcaagataaacgacaaacatatcgaggtgatagtcaggcag
atggtgcgcagggttaagattacaagcgtgggcgacagtacgtttatgctcggcgaacag
gtggaacgctatagatttgaagaggaaaacgagaagttgatcgccgaaggccggcaacct
gcaaccgctgagccgatgttgctcggcataactagggcctctttgacgactgacagcttt
atatctgcagcttcgttccaggagacgacgaaagtccttaccgatgcatcaattgccggc
aagatagattatttgaggggtcttaaggaaaatgtcataatgggccgattgattccggcg
gggacaggacgggtcttttatgacgagaaagagtgccgcagggccgctgctgcaacgtca
tga
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