Dissulfurimicrobium hydrothermale: LGS26_06730
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Entry
LGS26_06730 CDS
T07882
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dhr
Dissulfurimicrobium hydrothermale
Brite
KEGG Orthology (KO) [BR:
dhr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dhr03016
]
LGS26_06730
Enzymes [BR:
dhr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LGS26_06730
Transfer RNA biogenesis [BR:
dhr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LGS26_06730
Prokaryotic type
tRNA splicing ligases
LGS26_06730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
RuvA_N
Motif
Other DBs
NCBI-ProteinID:
UKL13185
LinkDB
All DBs
Position
1408179..1409609
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AA seq
476 aa
AA seq
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MNINRLKRLDECQWEIPIFDDMHVPAIIYADRALIEEMDEKVYDQIANVASLPGIVKAAI
AMPDAHWGYGFPIGGVAAFDPDQDGIISVGGVGYDISCGVRTMITGLTRQEIAPKIKTLV
DKLFETVPSGVGSEGKIRLSPAKLDDVLIGGARWAIELGYGVPEDLDYIEEHGCITGADP
SCVSETAKKRQYRQVGTLGSGNHYLEIQYIEEIFHQPSADAMGLKKNDVVVAIHCGSRAL
GHQIGTDYIQILGQASRKYNIPIKERELVCAPIRSSEGEAYYKAMACGVNCALANRQVIG
HLVRQVFNDIFSGPEVKILYDVSHNTCKIENHYVDGEIKRLYVHRKGATRAFGPGRTELP
EKFRGIGQPVFIGGTMGTHSYILVGQEKGEALVWGSACHGAGRAMSRNAALKRWKGKDVI
QRLADKGIIVRTASYRGAAEEAPDAYKDVSAVVDAIDRAGLARKVARVKPMACIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgaatatcaatagactgaagcggttggatgaatgccagtgggagatacctatctttgat
gatatgcatgtaccggccataatctatgctgaccgtgccctaatcgaagaaatggatgag
aaggtgtatgaccaaatcgccaatgtcgccagtctccctggcattgttaaggctgcgata
gcgatgcctgatgcccattggggttacggtttcccgataggcggtgtggctgcatttgat
cctgatcaagatgggatcatctcggtaggtggcgttggttatgatatatcctgcggtgtg
cgaactatgatcactggtcttacacggcaagagattgcccctaagatcaagaccttggta
gataaactctttgaaacagtgccttccggggttggttcggagggaaagatacgactttct
cctgctaaattggatgacgtacttatcggcggtgcaaggtgggcgatagagctgggatat
ggcgtgcccgaagatctcgattatatcgaggagcatgggtgcattacaggggccgatcca
tcgtgcgtgtctgaaaccgcaaaaaaacgacaatacaggcaggttggaaccttgggttcc
ggcaatcattatcttgagattcaatatatagaggagatatttcatcaaccttcagcggat
gctatgggtcttaaaaagaacgatgttgtggtggctatccactgcggttccagggcgctc
ggtcatcaaatcgggactgactacatccaaatactcggccaggcgtctagaaaatataat
ataccgataaaagaaagggagcttgtatgcgcgcccataagatcttctgagggcgaggca
tattacaaagcaatggcttgcggggtgaattgcgcccttgccaatcgccaggtcatcggc
catctggtacgccaggtctttaatgatatcttttcagggcctgaggtaaagattctctat
gatgtcagccacaacacctgcaagatcgaaaatcattatgtggacggggaaataaagcgg
ctatatgtgcatagaaagggtgcgacaagggcatttggaccggggagaacggagttgccc
gagaaatttagggggatcggacagcctgtgtttattggcgggacgatggggacacattca
tatatattggttggccaagaaaaaggcgaggcccttgtttggggttcggcatgccatggc
gctggccgtgctatgagtagaaatgccgccttaaaaaggtggaaaggcaaagatgtgatt
caacgtcttgcggacaaaggcataatagtccgtacagcaagctatagaggtgcagcggaa
gaggcccctgacgcctataaagacgtttcggcggttgtagacgccatagacagggctggg
cttgcaaggaaagttgcacgggtgaaaccgatggcgtgcatcaagggttga
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