Dissulfurimicrobium hydrothermale: LGS26_07530
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Entry
LGS26_07530 CDS
T07882
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dhr
Dissulfurimicrobium hydrothermale
Brite
KEGG Orthology (KO) [BR:
dhr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhr03019
]
LGS26_07530 (hrpA)
Enzymes [BR:
dhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LGS26_07530 (hrpA)
Messenger RNA biogenesis [BR:
dhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LGS26_07530 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
WHD_HA2
HA2_C
AAA_19
nSTAND3
NACHT
AAA_22
PhoH
SRP54
AAA_30
nSTAND_NTPase5
AAA_25
ABC_tran
Ank_4
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
UKL13331
LinkDB
All DBs
Position
1567954..1571796
Genome browser
AA seq
1280 aa
AA seq
DB search
MTISSWLPSNLDISCPPGLPIAPYWEKLRKAIEDNRVVIVIGETGCGKTTQLPKIAIAAG
RGRQGRIVCTQPRRVAAIAVASRLSAELGETGLAVVGYKVRFRDRTPKTAIIKFVTDGML
LAELQSDPRLRTYDTVILDEAHERSLNIDILTGVIKGLMPSRPELKLIISSATLHTQQFL
RLFPDAEVVKIEGRGHPVDIIYRPFLLPGDEAATTPEEQVAAAIDELLDGGGTGDVLAFL
ATERQVIEATRLLKSRWGRDVLILPMFGRLSFFDQQRIFAPSHQRKIVIATNIAETSLTI
PGIRYVVDSGLARMLRYNIRTRTTAMPVVPISKASAEQRAGRAGRTGPGICIRLYSREDF
EHRHDYTPPEILRSNLAEVILKLISMGIKDVSGFAFLDPPSEKAIKEGFDTLKELSALDR
QGRITPMGRLMARLPLDPRIARIIIQAERENALREAIIVAAALGIQDPRERPAEKEAQAD
RAHSVFIDQSSDFASYIKIWNFIHEKRQAGFTKNQIRRLCKDNLLSFQRIEEWMEIHDQI
LDILIETGGFHLNDRPAGFDALHRSILAGFLSRIAFLNKKESVYAGARGTKIQIFPGSGL
FKRRPRWIVAAELVRTSQLFARTVAQVRPEWIEELAGPLAQREYSDPHWERARGEVMAWE
CVTVFGLVVAARRPVSYSRINPQKAREIFISQGLATCNLKGDYPFLTHNRQIISDLEGLV
GRIRRRDIYEKDTAATHLDAGLKVLEEASGLGPISDERTLARAIRLVGDLPLFLDRDAIL
KDIKADDIQNLFPGHLNISGQEIELVYSFSPGNERDGLTARIPLAAIGRLRQEDFQWLVP
GFLPEKVDFLLRGLPKEIRNKLIPIVGTTDVICRHIEAQRDKSTLFDAIEATLHKLYDIT
VTRDQWPDQRSLPPHLVMRFEVIDDGGRPLAAGRDLEALRMALREKVAVDLDMTLGWLRR
CIERPVPSLNDLPDLPEQLSVGPDGLGIAFFPAIERDEHGGLHISVLRSQDEAISMTRQS
LRCEFSFALAKELHYLKKNISLIEVPLNVIHWAGGAERLKESMVEWIEDVFFGRWYWHGL
PSRGDILKRLKYLKANLYKDAQIHLKQLKSLIVQLGATMAQVERLAERKGLATKQAYKEM
RMELDEMFPRGLPWAVAPTPEEAGDRSDESCEAMTRRLKALTIRAQRAYTDPLKDAAKSQ
RVRPYKERLDTANAAFSQGNRPAELAGLIAEFRLLVIEYYISIFAPELKTIVTVSQKRLD
EKWEHIAKVLQDGAMTKNGP
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
gtgacgatttcaagctggttgccttcaaaccttgacatttcttgcccgccagggctacct
atagccccttattgggaaaagctgcgcaaggccatagaagacaatagagtggtcattgtt
ataggtgaaacggggtgtggaaagacaactcaacttccaaagatagctatagcggcaggt
agaggcagacagggccgcatcgtctgtacacagccaaggcgtgtagccgccattgctgtg
gcatccaggctctcagcagagcttggagaaacaggcctggccgttgtaggctacaaggta
agatttagggatcgtacaccaaagaccgccattataaaattcgtaaccgacggcatgctc
ctcgcagagctgcagagtgacccaaggctcaggacctatgatacagtgatccttgatgag
gcgcacgaacggagccttaacatcgatatactgaccggggtcatcaagggccttatgcca
tcaaggccagaactgaaactaataatatcttcggctacgctccatacgcagcaatttttg
agacttttccctgacgccgaggtggtgaagatcgaaggaagaggccatcctgtcgatatc
atctacaggccctttcttttacctggagatgaagcggccactacgcctgaagagcaggtg
gctgcagccatagatgaactcctggacggaggtggcacaggcgatgttctcgccttcctg
gccacggaaaggcaggtgattgaggcgacaagactcttgaagtcccgttggggccgcgat
gtattgatattgcccatgttcggacgtttaagtttttttgaccaacagcggatattcgcc
ccgtcacaccagcgcaagatcgtcatcgctaccaatattgcagagacatctctcaccatc
cctggcatacgctatgtagttgactcgggactggccaggatgctccgctacaatatccgc
acaaggacaaccgccatgcctgtcgtcccaatttcaaaggcaagcgccgaacagcgggcc
ggcagggcgggacgcaccggccccggtatctgtataaggctttacagcagagaggacttc
gaacatcggcatgattacacaccgcccgagatactgcgctcaaacctggccgaggtgatc
ttgaagctgatcagcatggggatcaaagacgtctcaggtttcgcttttctggacccccca
tctgaaaaggctataaaagagggcttcgatacgcttaaagagctaagtgctttggacagg
caaggacgaattacgcctatgggccgtcttatggcaaggcttccgcttgacccgcgcatt
gctcgcatcatcatccaggccgaaagggaaaatgccttgagagaagcaatcatagtagca
gcggcattgggtatccaggatcctagagaacgtccggcggagaaggaggcgcaggccgac
agggcccacagcgtcttcatagatcaatcatccgactttgcaagctatataaagatttgg
aacttcatccatgaaaaaaggcaggcaggctttacaaagaatcagatcaggcgcctttgc
aaagacaatctactatcttttcagcgtatagaggagtggatggagatccatgatcaaata
ctggacatcttgatcgaaaccggtggttttcatctcaacgaccgccctgcaggattcgac
gccctccatcgctctattttggctggttttctaagccgcatcgcctttcttaataagaaa
gagtcggtatatgccggggccaggggcacaaagatccaaatattccccggctctgggctc
ttcaagagacggccgaggtggatcgtggcagccgagcttgtaagaacctcgcaactcttt
gcaaggaccgtggcacaggtaagacctgagtggatagaagagctcgcaggacctctggct
caaagggagtattcagacccgcattgggagagagccagaggggaagttatggcgtgggag
tgcgtaactgtcttcgggcttgtcgtagcggcaagacggcctgtatcctattccagaatc
aatccacagaaggcaagggagatattcatatcccagggccttgcaacgtgcaatctcaag
ggagactatccgtttttgacccacaacaggcagattatatccgacttggaaggccttgtc
ggccgaataagacggcgtgacatctatgaaaaagacacagcggcaactcaccttgatgcc
ggactcaaggtgcttgaagaggcctcaggccttggacctatatcggatgaacgcaccctt
gccagggcgatacggttagttggagacctgcctctgtttttggacagggacgccatctta
aaagatatcaaggcggatgacatccaaaacctatttccaggccatctgaatatatcgggc
caagagatagaacttgtctatagcttcagtccaggcaacgaaagagacggcttgaccgcc
agaataccgcttgcggccatcggccgtctgaggcaggaagatttccaatggcttgttcct
ggattcctgccagaaaaggtagattttcttttacgcggattgcccaaggagatcagaaat
aaactcattcctattgtcgggacgacagatgttatatgcagacatattgaggcacaacgg
gataaaagtacactctttgacgccatagaggctacgctgcataaattgtacgacattaca
gtgacaagggatcagtggccagatcaaaggtctttgcctccccatctagtcatgaggttt
gaggtgatagatgatggcggcagacccttggccgcaggcagggatcttgaggccttgcgc
atggcactgagagaaaaggtggccgtggatcttgatatgaccctgggctggctcaggcgc
tgtattgagagaccggttccttccctaaacgacctgccagatctgcctgaacagctgtca
gtaggaccggacggtctaggcatcgccttcttccctgccattgaacgtgatgaacacggt
ggcctacacatcagtgtgctccgttcccaagacgaggcgatatcgatgacccgccagtcg
ctgagatgcgaattctcctttgccctcgcaaaggagttgcactatcttaaaaaaaatata
tcacttatagaagtccctcttaatgtcatccattgggctggcggcgcggaaagactcaaa
gaatccatggttgaatggatcgaagatgtcttttttggccggtggtattggcatggtctg
ccttccagaggcgacatcctcaagaggctaaaatacctaaaggccaatctctataaagac
gcccaaatacatttgaaacaactcaaatctctcatcgttcaattgggcgcaaccatggct
caggtggaacgattggccgagcgtaaaggccttgcaaccaagcaggcctacaaggagatg
cgtatggaactcgacgagatgttcccacgcggtctcccatgggccgtcgctcctactcct
gaagaggccggcgacagatcggacgaatcatgcgaggccatgacaagacggctcaaggcc
ctaaccatccgcgcccagagggcttatacagaccccttgaaggacgccgcaaaatcccag
cgggtcagaccgtacaaagaacgattggatacagcgaatgccgctttcagtcaagggaat
agacccgctgaactcgctgggctcatagcggaattcaggcttttggttatagaatattat
atctctatctttgcgcctgagctgaagaccatcgtcacagtctcgcaaaaacgcctagat
gagaagtgggagcatatcgcaaaggtcctacaggacggcgcaatgaccaaaaatggacct
tga
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