Dissulfurimicrobium hydrothermale: LGS26_09480
Help
Entry
LGS26_09480 CDS
T07882
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dhr
Dissulfurimicrobium hydrothermale
Pathway
dhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGS26_09480 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhr03019
]
LGS26_09480 (rnr)
03016 Transfer RNA biogenesis [BR:
dhr03016
]
LGS26_09480 (rnr)
Enzymes [BR:
dhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LGS26_09480 (rnr)
Messenger RNA biogenesis [BR:
dhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LGS26_09480 (rnr)
Transfer RNA biogenesis [BR:
dhr03016
]
Prokaryotic type
tRNA degradation factors
LGS26_09480 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_Dis3
OB_cyt-4
RNase_II_C_S1
Rho_RNA_bind
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
UKL13676
LinkDB
All DBs
Position
1989523..1991742
Genome browser
AA seq
739 aa
AA seq
DB search
MTKKKNTLDKKPPTKPKHTSKTDPLSIRILRVMRDAGRPLFLREINKAANLNREERHESA
SALEALINKGLVLQIKGKRYGLSDLMHLVTGNISVHPDGFGFVTPEQTGGPDIFIPPKAL
KGAIHGDRVVVRIEQTRGRRQEGSVIRILERRTKRIVGTFHKGKDIAIVVPEDERLAFEV
AIPKKATLKAKNGDVVVAEIVNYLPEGRSPEGRVIEILGDPNDLGVQARIVINKYELPHE
FSDDVVRQAAELPKIISQEDISDRKDLRAIPLITIDGENARDFDDAVFAKKTKTGYVIIV
AIADVGHYVKEGSPIDEAARERGTSVYFPNAVVPMLPETLSNHLCSLVPGEDRLVLAIEL
NLDRQGNLRRVVFSKAVIKSHRRLTYTEATSLLGCKTSDIAEEDRWLAKMLKLMKELALI
LNAKRVERGSIDFDMPEPEIILGLQGNLEDIVRRERNIAHRIIEEFMLAANEAVAAHLAK
NDVPTLYRVHPEPDRLRLNDFVSFARGIGLDIALPDEMSPRWCQEVLLKAAGSPIEYIIN
TLLLRSMQQAVYSPINIGHFGLASTHYLHFTSPIRRYPDLIVHRILTANMGRRKKTPLYT
EEVLSDLGRHCSQKERTAMEAEREMIDRLKVRLMADKIGEVYEGVISGVASFGFFVELKD
VFIEGAVRLVDLTDDYYVFDQAGYRLVGQRHKRTFQIGDIVKVRVKEVNVARRHINFEVI
EERPASSRASNCNKTVVGG
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaaaaaaatacgctggataaaaaacccccaacaaagcctaaacatacatcc
aaaacagatccattatccatccgcatcctgagggtgatgagagatgcaggacgtcctctt
ttcttaagagagatcaataaggcagccaatctcaatagggaagagaggcatgaatccgcc
agcgcgctggaggccctcataaataaagggctagtcctacagatcaagggcaagagatat
gggctctcagatctcatgcaccttgttacagggaacatctccgttcatcctgacggcttt
ggattcgtaacaccggaacagacaggaggtcctgacatctttatcccgccgaaggcctta
aaaggggccatacacggcgacagagtggtggtgcggatagaacagaccagggggagacgg
caagaaggctcagttataaggatacttgagcggaggacaaagcggatagtcgggaccttc
cataagggcaaggatattgcaattgttgtacccgaagatgagcgccttgcatttgaggtc
gccataccgaaaaaggccacactgaaggccaaaaacggcgatgtggtggttgcggagata
gtaaattacctgccggaggggaggagtccagagggccgtgtgatagagatactcggcgat
ccgaacgacctcggtgtccaagctaggatagtcataaacaagtacgagctgccgcatgaa
ttctccgacgatgttgtcaggcaggccgctgaactgccaaagatcataagccaagaggac
atcagcgacagaaaggacctgcgggccataccccttattacgatcgacggcgagaatgca
agggacttcgacgatgcggtctttgcaaaaaagacaaagactggttatgtcattatcgta
gccatagcggacgtaggccattacgtaaaagaaggctcacctatagacgaagccgcgcga
gaaaggggcacaagtgtctatttcccaaacgcggtcgtccccatgctgcccgaaaccctt
tcaaatcacctatgcagcctggtgccaggtgaagatcgcctggtccttgcaatagagctc
aaccttgacaggcagggaaatctaaggcgggtcgttttctcgaaggccgtgataaagagc
catcggaggttgacatataccgaggcgaccagcctattggggtgcaagacgagtgatatt
gcagaggaagatcgctggcttgcaaagatgttgaagttgatgaaagagctcgcccttatc
ctcaatgcaaagagggtcgagaggggcagcatagactttgacatgcccgaaccagaaata
atccttgggcttcaaggcaacctcgaagatatagtaaggcgcgaacgcaacatcgcccac
cgtataatagaggagtttatgctcgcggcaaacgaggctgtagccgcgcatcttgcaaag
aacgacgtcccgaccctctacagggtacatcctgaacccgacaggctgagactgaacgac
tttgtctcattcgcccgaggtatcggccttgacatcgcgcttccagatgagatgagccca
aggtggtgtcaagaggtactgctaaaggcagctggctcgcctattgaatacataataaat
acgctgctcttacgctccatgcagcaggccgtatactcgccgataaatatcgggcacttc
ggcctcgcctcgacccactacctgcatttcacctcgcccattcgccgttatcctgacctc
atagttcacagaatactcaccgccaatatgggacgcagaaaaaagacgcctctctatacg
gaagaggtcctctctgatctaggccgacactgttcgcagaaggagcggacggccatggag
gccgaacgcgagatgatagacaggctcaaggtcagacttatggcagacaagattggagag
gtgtatgaaggcgtcatttcaggggttgcgtcattcggcttctttgttgaactcaaagat
gtctttatcgaaggggcggtcaggcttgtcgatcttacggacgactattatgtatttgac
caggcgggatacaggcttgtaggtcaaaggcataagagaacgtttcaaatcggcgacata
gtgaaggtacgtgtaaaagaggtaaatgtcgcacgcagacacataaattttgaggtaatt
gaagaacggcctgcatcaagcagggcgagtaattgcaacaaaacagtagtaggcggataa
DBGET
integrated database retrieval system
