Dolichospermum heterosporum: NG743_05120
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Entry
NG743_05120 CDS
T08533
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dht
Dolichospermum heterosporum
Pathway
dht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NG743_05120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dht03019
]
NG743_05120
03009 Ribosome biogenesis [BR:
dht03009
]
NG743_05120
Enzymes [BR:
dht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NG743_05120
Messenger RNA biogenesis [BR:
dht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NG743_05120
Ribosome biogenesis [BR:
dht03009
]
Prokaryotic type
rRNA helicases
NG743_05120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
UUO16428
LinkDB
All DBs
Position
1145996..1147555
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AA seq
519 aa
AA seq
DB search
MNLSFQELGISQERAELLANMGFSEPTNIQTQAIPQLLNGRDVVGQSQTGTGKTAAFSLP
ILEKLDPNLKAVQAIVLTPTRELAIQVHAAISQFIGNSYLKAAAIYGGQSIDRQIMQLRR
GAQVVVGTPGRVIDLLDRGNLKLDQVRWFVLDEADEMLSMGFIDDVERILSQAPEERQTA
LFSATMPPSIRMLVNKFLNSPVTVTVEQPKAAPNKINQVAYMIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTSQLQSAGHSVDEYHGDLSQQARERLLIRFRNRQVRWVVATD
IVARGLDVDQLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQAFERRKQQAFERH
NRQTWQILSIPTKAQIEAQHIQKLRGQVAEALTGERLASFLPIISEMIEEYDAHAIAAAA
LQIAYDQTRPAWLLSGVDLPVEESPTPKPRINKRGDSGERERSSGGGRSGRSSWSKEGKG
NDDRRSSGGGSPKPKLKITHHESSPSPSNQKLGLPTVRE
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatcatttcaagaattaggcatttcccaagaacgggctgaactgttagcaaac
atgggtttttctgaacctacaaatattcaaacccaagcaattcctcaactattaaatggt
cgggatgtagttggtcaatcccaaacaggaacaggtaaaaccgcagctttttctctacca
attttagaaaaactagatcccaacttaaaagctgtacaagcaatagttttaaccccaacc
cgtgagttagcaattcaagttcatgcggctatttcccaatttattggtaacagttacttg
aaagcagcggctatttatggtggtcaatcaattgaccgccaaattatgcaactcagacgt
ggggcgcaagtcgttgttggtacaccaggacgggtcatagacttactagatcgtggtaac
ttaaaattagatcaagtcagatggtttgtcttagatgaagctgatgaaatgttaagcatg
ggcttcattgacgatgtagagagaattctttctcaagcacctgaagaaagacaaacagcc
ttattctcagcgacaatgccaccgtcaattcggatgttggtaaataaatttttgaattca
ccggtaactgtcaccgttgaacaacccaaagccgcaccgaataaaatcaatcaagtggct
tacatgattccccgtcattggacaaaagctaaagctttacaaccaattctggaaatggaa
gatccagaaacagctttaatctttgttcgcacccgccgcacagccgccgaattaaccagt
caattacaatctgctggtcatagtgtggatgaatatcatggtgatttgtcccaacaagcc
cgggaacgcctattaatccgtttccgtaaccgtcaagtacgttgggtggtagctactgat
attgtagcgcgtggtttggatgttgaccaactatcccacgtgatcaactttgatttaccc
gatagcgtggaaacttatgttcaccggattggtcggactggtcgggctggaaaagaagga
acggcaatttccttagttcaggcatttgaacgccgcaaacaacaggcatttgaacgccat
aaccgtcaaacttggcaaattctgtctattcctaccaaggcacagattgaagcccaacat
attcagaagttaagaggacaagttgctgaagctttaactggggaacggttagcttccttc
ttgccaattatcagcgaaatgattgaggaatatgatgctcatgcgatcgctgctgctgct
ttacaaatcgcctacgatcaaacccgccccgcttggttactatcaggagtagacctaccc
gttgaggaaagcccaactcccaaacccagaatcaacaaacgtggtgatagtggcgaacgt
gaacgcagttccggtggtggtcgcagtggtcgttcctcttggtcaaaagaaggtaaaggc
aacgacgacagacgcagcagcggtggcggtagtcctaaacccaagttgaaaatcactcac
catgaatcttctcctagtcctagtaaccaaaagttaggtttaccgacagttagagaatag
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