Dolichospermum heterosporum: NG743_15050
Help
Entry
NG743_15050 CDS
T08533
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dht
Dolichospermum heterosporum
Pathway
dht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NG743_15050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dht03019
]
NG743_15050
03016 Transfer RNA biogenesis [BR:
dht03016
]
NG743_15050
Enzymes [BR:
dht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NG743_15050
Messenger RNA biogenesis [BR:
dht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NG743_15050
Transfer RNA biogenesis [BR:
dht03016
]
Prokaryotic type
tRNA degradation factors
NG743_15050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
PRANC
Motif
Other DBs
NCBI-ProteinID:
UUO13413
UniProt:
A0ABY5LN87
LinkDB
All DBs
Position
3362019..3364373
Genome browser
AA seq
784 aa
AA seq
DB search
MEFSIATLLANFTDDKLVARKVLEKKLGCEDEESLEKLQITLDVLEKIGLLVKERGKYRR
VTEEGLIEAKLRCSSKGFCFAIQDSEGSEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLIMERSNHTLLARIKQVEEGFRAVPLDDRLLFELKLQLNSMKLEEAIDHLAHVE
ILRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFPDSILDAAAKLPKRLLKA
DLKNRLDLRDVFTFTIKSSNGDESVVENAFSVEKISADNWRLIFHITDVSHYIQADEALD
REALKRGKSVYLGELLLPMLPAAVTERCSLVPGSDRLALSLIITINPQSGEVEEWEIQPS
VINVNVAVSQGDTESILAAESTKVAAAVQEKLLDLQTLATAIKQIRLQRGSLQLNLPPSH
NPYYDEGSMGSVVLNDLPGRSLITELVILVNQLMADHLSALGIPSLWRVQGTPDPEDVQE
MLKLAVNLGVELGLDPELEIQPLDYQHLTGAFADSPSEQVLTYLLQDTLKPSVYSTTKGS
HFGLALSQYVHITAPLRRYPDILLQRVYHHLIEHGRDRRNTRVKDRINLRHSNCHEEINW
NVLPPELHQEIQSDLARVIVQINDREKEVQEAEADLAGLQKASLMKQRIGEVFPGVITGV
QSYGFFVEIEVPVESPTETSLANTLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASYR
LGDSCMVQVKSVDYYRQQIDLVTVGADGLPKSMGANGNNEDDDTGDIYSPNKTDPFDQEP
YDEE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacacttcttgccaattttacagatgataaattggtggctcgt
aaagtcctagaaaagaaactgggttgtgaggatgaagaaagtctagaaaaactccaaatt
actttggatgtgttagaaaaaattgggcttttggtaaaggaacgggggaaatatcgccgc
gttacggaagagggcttaattgaggcgaaactacgttgttctagtaagggcttttgtttt
gcgattcaagatagcgaaggctcagaggatatttacatccgcgaaagtcatttgagtaat
gcctggaatggcgatcgcgttttggttagagtcctcaaggaaggtagtcgccggcgatcg
cctgaaggtgaggtgaagttgattatggagcggtctaatcatactttactcgccagaatt
aagcaggtagaggaagggtttcgggctgttcctttggatgacagattgctgtttgaactg
aaactacaactcaacagtatgaagttggaagaggctattgaccatttagctcatgtagaa
attctccgctatccgttggcacaatatccccccttgggtcgagtggtacaaattctgggt
agtgatgctgaagccgcagcggatatagatttggtcacttgtaaacatgatttatcccga
acttttcccgattcgatcctcgatgcggcggcgaagttacccaagagactcctgaaagca
gacctgaaaaatcgtctggatttacgtgatgtttttaccttcactattaagagtagcaac
ggtgatgagtcggtggtagaaaatgcctttagtgtcgaaaaaattagtgctgacaattgg
cgattaatttttcacattacggatgtttcccactatattcaagcggatgaagctttggac
agggaagcactcaagcgtggtaagtcagtgtatctaggagagttattattgccgatgtta
ccagcagcggtgacagaacggtgttctttagtccctggaagcgatcgcttggctctttcc
ttgatcatcaccattaaccctcaatcgggagaagtggaggaatgggaaattcaaccgagt
gtgattaatgtaaatgtagctgtcagtcaaggggatacagaaagcatcctcgccgctgaa
agcaccaaagtggcagccgcagtccaagagaaattactagatttgcagactttagctact
gctattaaacagatacggttacagcgcggtagtttacagttgaatctcccacctagtcat
aacccctattatgatgagggatcaatgggatctgtggtactgaatgacttgccagggcga
tcgctcatcaccgagttggtaatattagtgaatcaactcatggctgatcacctcagcgcc
ttggggattcctagtttatggcgagttcaaggcacacctgatcccgaagatgttcaggaa
atgctcaaactagctgttaatttaggtgtggaattgggactagatccagaattggaaatc
caacccctagattatcaacacttgaccggtgcttttgccgattccccctcggaacaagtt
ctcacctatttattacaagataccctcaagccttccgtctacagcaccaccaaaggttct
cattttggactggctttatcccaatatgtccacatcaccgcccccctacgtcgttatcca
gacatcctcttacaacgggtgtatcatcacttaatagaacatgggcgcgatcgccggaat
acccgcgttaaagatcggattaacctgcgccattccaattgtcacgaagaaattaattgg
aacgttctccccccagaactccaccaagaaatccaaagtgacttagccagagtcattgtg
caaattaatgaccgggaaaaagaagtccaagaagctgaagccgatttagccggactccaa
aaagcttccttaatgaaacaacgcattggcgaagtctttcccggcgtaattaccggagtt
caatcctacggcttctttgtcgaaattgaagtcccagtagaatcgcccacagaaaccagt
ctcgctaataccttacgggtagaaggactagttcacgtcagttccctcaaagacgattgg
tatgaatatcgagccagacaacaggctttatttgggcggaaaaatcgagcttcataccga
ttaggtgatagctgtatggtacaagtcaaaagtgttgattactaccgtcaacaaattgat
cttgtcaccgttggcgctgatggtttaccaaaaagtatgggtgcaaatggtaacaatgaa
gatgacgatacaggagacatttattcacccaataaaaccgacccttttgatcaagaaccc
tatgatgaggaatag
DBGET
integrated database retrieval system
