Dolichospermum heterosporum: NG743_24750
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Entry
NG743_24750 CDS
T08533
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dht
Dolichospermum heterosporum
Pathway
dht03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NG743_24750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dht03400
]
NG743_24750 (mfd)
Enzymes [BR:
dht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NG743_24750 (mfd)
DNA repair and recombination proteins [BR:
dht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NG743_24750 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UUO15173
LinkDB
All DBs
Position
complement(5479061..5482540)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSFSSIVRALARSPLTAELITKLNKQQELRLNGISRLPKGLVASALANYEDQDLCVVCAT
LEEAGRVFAQMEAMGWKTVHFYPTSEASPYEPFDPENELSWGQMQVLADLVNGQSSVVSG
QLPKQRTAIIVTVGALQPHLPPPDAFKSFCVTLEKGMEFDLDGFGEKITILGYERVPLVE
TEGQWSRRGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPATQRSALDKVEKVTLTPTSF
APIINTALTENVETFHEPSLQELGTLEGSRRFLGLAFAKPASLLDYLAANTLVAIDEPEQ
CYAHSDRWVENANSQWSVVSGQLSVGLPKIHRNFDECIGEISNFRKLYLSELSEENHGLN
LASRPLPVTPHQFAKLGETIRNERERNFAVWIISAQPSRSVSLLQEHDCPAQFIPNPRDY
QAIDKLQINHIPIALKYSGLAELEGFILPSFRLVIVTDREFYGQHSLANFGYVRKRRQAT
SKQVDPNKLRQGDYVVHRSHGIGKFVKLESLTINDETRDYLVVQYADGLLRVAADQVSSL
SRFRTSGDKAPELHKMTGKAWENTKNKVRKAIKKLAVDLLKLYAARSQQQGFSYPADMPW
QEEMEDSFPYQPTTDQLKAVQDVKRDMESERPMDRLVCGDVGFGKTEVAIRAIFKAVTAG
KQVALLAPTTILTQQHYHTIKERFAPYPVNVGLLNRFRSAEEKRNIQKRLATGELDIVVG
THQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSG
IREMSLITTPPPTRRPIQTHLAPLNSDIIRSAIRQELDRGGQVFYVVPRVEGIEETTTKL
REMVPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGLDIPRVNTILIEDAH
RFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQEFTQLGSGYQLAMRD
MEIRGVGNLLGAEQSGQMDVIGFDLYMEMLEEAIREIRGQEIPKVEDTQIDLNLTAFIPA
TYIPDLDQKMSAYRAVATVKSKYELKQIAAEWTDRYGTIPVPANQLLRVMELKQLAKNLG
FSRIKPENKQHIVLETPMEEPAWNLLAENLTPTMKARFVYSPGKVTARGLGVFKADQQLQ
TLIDTFVKIQGAISETAGV
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtccttctcttctattgtgcgtgctttggcgcgatcgcctcttaccgcagaactaatt
actaaactcaataagcaacaggaattgcggttaaatgggatttctcggctacccaaagga
ctggtagcttcagcattagcaaattatgaagatcaggatttatgtgtggtctgtgccact
ctagaggaagctgggcgggtttttgcccaaatggaagcaatgggatggaaaactgtccac
ttttatcccacgtccgaagcttccccttatgaaccctttgaccctgaaaatgagttgagt
tggggtcaaatgcaggtgttagctgatttggtcaatggtcagtcgtcagtggtcagtggt
cagttgccaaaacaaagaactgccataattgtgacagtgggggcgttgcagccgcatttg
ccaccaccggatgcgtttaaatcattttgtgtcaccttagaaaaagggatggaatttgat
ttagatgggtttggggaaaaaatcacgattttgggatatgaacgagttcccttagtggaa
actgaaggacaatggagtagacggggagatattgtggatgtgtttcccgtgtcctccgag
ttgcctgtgcgcttggaatggtttggcgacgaaattgaacaaattcgggaatttgacccg
gctacccagcgttctgccttggataaggtggaaaaagttacccttacccctacaagtttt
gcaccgattatcaacacagcacttacagaaaatgtagagacgtttcatgaaccgtctcta
caagagttaggaacattagaaggaagtcggcggtttttggggttggcttttgcaaaaccg
gcttcattgctggattatttagcagcaaatacccttgttgccattgatgaaccagaacaa
tgttatgctcatagcgatcgctgggtggaaaatgctaatagtcagtggtcagtggtgagt
ggtcagttgtcggttggattacctaagattcatcgaaactttgatgagtgtataggggaa
attagtaattttagaaagttatatttatcagaattgtcggaagaaaatcatggtttaaat
ttagcaagtagacctttacctgttacacctcaccaatttgccaagttaggggaaactatt
agaaacgagagagaacgcaattttgcagtttggataatttcggctcaaccttcccgttcg
gtttctctgctacaagaacatgattgtcctgcccagtttatccccaatccccgtgattat
caagctattgataaactgcaaattaatcatatcccgattgctcttaaatattccggttta
gcagaattagaagggtttattttaccttcttttcgattagttattgtcaccgatagagaa
ttttatggacaacattctttagctaattttggttatgtccgcaaacgtcgtcaagccaca
tctaaacaagttgatcctaataaattacgtcagggagattatgttgttcatcgtagtcat
ggtattggtaaatttgttaaattagaaagtctaacaattaatgatgaaacccgtgattat
ttagttgtgcaatatgcagatggtttattaagagttgcggctgaccaagttagttcttta
tctcgttttcgcaccagtggagataaagccccagaattacacaaaatgaccggaaaagcc
tgggaaaatactaagaataaagtccgtaaagccattaagaaactagcagtagatttgtta
aaattgtatgctgcccgttctcaacaacaaggtttttcctatcccgcagatatgccttgg
caagaagaaatggaagattcttttccttaccaacctaccacagatcagctaaaagctgta
caagatgtgaaacgggatatggaaagtgaaagaccgatggataggttagtatgtggagat
gtgggttttggcaaaactgaagtggcaattcgggcaatttttaaagctgtcaccgcagga
aagcaagtagcacttttagccccaaccacaattctcactcaacaacattatcatacaatt
aaagaacgttttgccccctatcctgtgaacgtggggttactaaatcggtttcgcagcgca
gaagaaaaacgcaatattcaaaaacgtctagcgactggagaattagatatagttgtcggg
acacatcaattattgggaaaaggtgtgcaatttaaagatttaggacttttagtaattgac
gaagaacaaagatttggagttaatcagaaggaaaaaataaaaagcctcaaaacgcaagtt
gatgttctcactctttccgcaactcctattcccagaaccttatatatgtcattatcagga
attcgggaaatgagtttaattaccactccacctcccaccagaagaccaattcaaacccat
ctcgcacctttaaattctgatattatcagaagtgcaattcgtcaagaattagatcgaggt
ggacaggtattttatgtagttccgcgagtcgaagggattgaagaaactactacaaaattg
cgagaaatggtaccaggaggaagatttgcgatcgctcatggtcaaatggacgaaagcgag
ttagaatcaactatgctgactttcggtaataatgatgccgatattcttgtttgtacgaca
attattgaatctggtttagatattccgcgagtcaacacaatattaattgaagacgcgcac
cgttttggtctatctcaattatatcaattacggggtcgggtaggacgtgccggcattcaa
gcccacgcatggttattttaccccaaacaaagagaattatccgatgcagctagacaaaga
ttaagagcaattcaagaatttactcaactcggttctggatatcaattagcaatgcgagat
atggaaattcgcggagtgggaaacttgctaggtgcagaacaatctggacaaatggatgta
attggctttgatttgtacatggaaatgttagaagaagcaattcgagaaattagaggtcaa
gaaatacccaaagttgaagatacccaaattgacctcaatctcactgcatttatccctgct
acctacattcctgatcttgatcaaaaaatgagtgcttatcgcgctgtagccacagtaaaa
tcaaaatatgaactcaaacaaattgccgctgaatggactgatagatatgggactatacca
gttccagcaaatcaattattgcgagttatggaattaaaacaattagctaaaaatctggga
tttagtcgcattaaaccagagaataaacagcatattgttttagaaaccccaatggaagaa
ccagcttggaatctcttagcagaaaacctcactcccacaatgaaagcaaggtttgtttat
tctcctgggaaggtaacagcaagaggtttaggagtatttaaagcagatcaacaattgcag
actttaattgatacttttgtaaaaatacaaggggcaatttcagaaactgctggagtttaa
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