Maridesulfovibrio hydrothermalis: DESAM_21068
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Entry
DESAM_21068 CDS
T02428
Symbol
rny
Name
(GenBank) endoribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dhy
Maridesulfovibrio hydrothermalis
Pathway
dhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESAM_21068 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhy03019
]
DESAM_21068 (rny)
Messenger RNA biogenesis [BR:
dhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DESAM_21068 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Hydrolase_3
KH_2
KH-I_KHDC4-BBP
PSII_Pbs27
Motif
Other DBs
NCBI-ProteinID:
CCO23349
UniProt:
L0R9C1
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All DBs
Position
1403044..1404600
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AA seq
518 aa
AA seq
DB search
MFGDFFLIIFGMALGAAGGYALHRYVNSKRLADSQGLADRIVQEARKEAEAMKKEIRLQA
QDEVYALKKEQENEYKEMERGLRKQEARLQEKEERLEKKLEKVANKESEVVTLEKRMIKQ
EKKLEDLREGLERRKDEHERKLQEVSGLTVEEARDKLMTEIESRTRHEAAKMVRSIEMEA
KEEGSRKARKILALAIQRYSGDYVNEQTVTAVALPSEDMKGRIIGREGRNIRALEAATGV
DLIIDDTPETVVLSAYSPLRREVAKQALERLIHDGRIHPARIEDIVNKVEQEMDVKLREI
GEQATFDVGVHGIHPEIVKLIGQLQYRTSFSQNVLQHSLEVAFLCGIMAAELGMDEKMAK
RAGLLHDIGKAVDHEIEGPHAVIGADLAKKHGESKEIIHAIQAHHEDVPPLSILATLVQA
ADSLSGARPGARKELLENYVKRLEELENVATGFDGVSKAYAIQAGREIRVMVDAEKVTDD
NTHMLCKDIATKIENNMTYPGQIRVTVIRERRSVGYAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgttcggggatttttttctgattatttttggaatggccctaggtgccgcaggcggttat
gccctgcaccgttatgtgaattccaagcgcttggcagattcacaggggttggctgacagg
attgtccaggaagcccgtaaagaagctgaagccatgaaaaaagaaatcaggcttcaggct
caggacgaagtttatgctcttaaaaaagagcaggaaaatgagtacaaagaaatggaacgc
ggcctgagaaaacaggaagcgcgtctccaggaaaaagaagaacgtcttgagaaaaagctt
gaaaaggtcgctaataaagagtccgaagttgtgactcttgaaaagcgcatgatcaagcag
gaaaagaaactcgaagacctgcgtgaaggtcttgaaagaagaaaggatgagcatgagcgt
aagcttcaggaagtctccggacttactgtggaggaagcccgcgacaagcttatgactgaa
atagaaagccggactcgtcacgaagcagccaaaatggttcgctcaatcgagatggaagca
aaggaagaaggctcccgcaaggctcgtaagattttggcccttgccatccagcgttattcc
ggtgactacgtgaatgagcagactgttactgctgtggcccttccctcggaagatatgaag
ggacgtatcatcggtcgtgaaggtcgtaacattcgagcgctcgaagcagcgacaggtgtt
gaccttattattgatgatacaccggaaacagttgttctttccgcttacagcccgctgcgc
cgcgaggttgctaagcaggctcttgaaaggttgatccatgacggacgcattcaccctgca
cgaatcgaagacatcgtgaacaaggtggaacaggaaatggacgtcaaactgcgtgaaatc
ggtgaacaggctacatttgatgtaggcgttcacgggattcatcctgagattgttaaattg
atcggccagcttcagtaccgcaccagtttttctcagaatgtgttgcagcactctctggaa
gttgcattcctttgcggaattatggcagcagagctgggcatggacgagaagatggctaag
cgcgcaggacttcttcatgacataggtaaagccgttgaccatgaaatcgaaggaccgcac
gctgttatcggtgctgatcttgctaaaaaacatggtgaatccaaggaaattatccacgct
attcaggctcaccatgaagatgttcctcctctgtcaattctggcgacacttgtacaggct
gcggattcactttccggtgcccgtcccggtgccagaaaagagcttctcgaaaactacgtg
aagcggcttgaagagctggaaaatgttgcgaccggttttgacggagtatccaaggcatat
gccattcaggccggccgtgagatcagggttatggtcgatgctgaaaaagttactgacgat
aatactcatatgctctgtaaagacattgctaccaagattgaaaataatatgacttatccc
ggtcagattcgtgtaaccgtaattcgtgaacgccgttccgtcggttatgcaaaatag
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