Maridesulfovibrio hydrothermalis: DESAM_22025
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Entry
DESAM_22025 CDS
T02428
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
dhy
Maridesulfovibrio hydrothermalis
Pathway
dhy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dhy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DESAM_22025 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dhy03021
]
DESAM_22025 (rpoD)
Transcription machinery [BR:
dhy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DESAM_22025 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
PXA
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
CCO24292
UniProt:
L0RDJ4
LinkDB
All DBs
Position
2417884..2419641
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AA seq
585 aa
AA seq
DB search
MSNIKDIQAIKTLISEGKKQGFLTFEQLGKALPAEFNQSKQLEDVIKIFDQLNIAIVNSD
EDGKKLMDAGGDSEEEINLTESAEDTVDYVSRSTDPVRMYLREMGAVGLLDREGEVVIAK
KIENGELEVLYALVEIPVAIEELISVGEHLDESRIKLKDVVKTIEEDDPSEDEMNQRQRV
IFLLDEVKKIYKKKRKIYDKLDYCAQPDKRVTAVQNEIVSFKQEVVDRLRDIKIEKTLID
QIIETVGDYVRQMHNCQRDLSAYILSTGKTQQEIKDLFKKIDDREINPVVASDELGMTVD
ELFSFKEMISGKMEILVRLQDKCCHNVHDLEEVLWRIKHGNRSAMQAKQELIRANLRLVV
SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQAR
TIRIPVHMIETINKLIRTSRYLVQELGRDPAPEEIAERMDYPLEKVKKVLKIAKEPISLE
TPIGDEEDSSLGDFIEDKKATAPAEEVVSTKLGEQIATVLSDLTPREEQVLRKRFGIGEK
SDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSALLRSYYEN
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacattaaggatattcaggctattaagacactgatttctgaaggtaagaaacaa
gggtttctgactttcgagcagcttggtaaagccctgcctgctgaattcaaccagtccaaa
caacttgaagatgtaattaagatttttgatcagcttaacatcgctatcgtcaattcagat
gaagacggtaaaaagcttatggatgccggtggtgattccgaagaggaaatcaaccttacc
gaaagtgccgaagatacagttgattacgtttcccgcagcaccgatcctgtacgcatgtat
ctgcgtgagatgggcgcggtaggacttcttgaccgtgaaggtgaagttgtaatcgctaaa
aagattgaaaacggcgaactggaagttctatacgcactggttgaaattccagttgcaatt
gaagagctgatcagtgtcggtgaacatcttgatgagtcccgcatcaaactgaaagatgtt
gttaagaccatcgaggaagacgaccccagtgaagatgagatgaaccagcgtcagcgcgtc
atctttttgctggatgaagtcaaaaaaatatacaagaaaaaaagaaaaatatacgacaaa
ctcgactattgcgcacagcctgataaacgcgtcaccgctgtgcaaaatgagattgtctct
tttaagcaggaagtagtcgacagactgcgtgatattaaaattgaaaaaacccttatagat
cagattattgagactgtaggggactacgtaaggcagatgcataactgccagcgtgatctt
tccgcttacatcctttccaccggaaaaactcagcaggaaatcaaagatcttttcaaaaaa
attgatgaccgtgaaatcaatcctgtcgttgcttccgatgaactcgggatgactgttgat
gagcttttctcctttaaggaaatgatttccggtaaaatggaaattctggttcgtttgcag
gataaatgttgtcacaatgtgcacgaccttgaagaagttctctggcgtatcaagcatgga
aaccgttctgctatgcaggctaagcaggagctgatcagagctaacctgcgactggttgtt
tctattgctaaaaagtatactaatcgcggacttcagttccttgatttgatccaggaaggt
aatatcggcctgatgaaggcagttgataagtttgaatatcagcgtggttacaagttttct
acatatgccacatggtggatcaggcaggctatcacccgcgctatcgcggatcaggcccgt
actatccgtattccggttcatatgattgagaccatcaacaaacttatccgtacttcacgt
taccttgttcaggaactcggccgtgaccctgcgccggaagaaattgcggagcgtatggat
tatcctctggaaaaagttaaaaaagttctcaaaattgccaaggaacctatttctcttgag
acacctatcggtgacgaagaggattcgagtcttggagattttattgaagataaaaaagca
accgctccagctgaagaggtggttagcactaaactcggcgaacagattgcaactgtgctt
tctgatctcactccgcgtgaagagcaggttctgcgtaaaagattcggtatcggcgaaaag
tctgatcacactcttgaagaggtcggtaaactttttaatgtcacccgtgagcgtattcgt
cagatcgaagccaaggctcttagaaagctgaggcatccggtccgcagtgcgttgcttcgt
tcctattacgaaaactaa
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