Maridesulfovibrio hydrothermalis: DESAM_22906
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Entry
DESAM_22906 CDS
T02428
Name
(GenBank) Beta-lactamase domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dhy
Maridesulfovibrio hydrothermalis
Pathway
dhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESAM_22906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhy03019
]
DESAM_22906
Messenger RNA biogenesis [BR:
dhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DESAM_22906
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CCO25173
UniProt:
L0REE4
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All DBs
Position
3331910..3333613
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AA seq
567 aa
AA seq
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MSEPQLTVCPLGGLGEIGLNCMLLSTAESLVIIDCGLLFPDDALFGVDIAIPRFDHILSQ
KDRLKAIFLTHGHEDHIGALPWLLPYVDVPVYGSQFTLGLVENKVREHNLEGYVDLREVK
AYDRVDLGDMAFNFFPVCHSIIDGFGLGIETPVGRVVHTGDFKIDRDPLDGQATDLKAFK
EFSEQGVTLLFSDSTNVEQEGFALTEREIKGSMRSLFEDAEGRILVTLFSSHIQRMQEIF
DLAEETGRKVGISGKSLARNIDLARDMGKLRVPSRNIIETDELPDYRDDEIVLLVTGSQG
ESLASLSRLSTGEHRQLNIKEGDLVLMSSRFIPGNTKAITKVINRLYKLGAEVLYEKAQG
IHASGHAHKEELRTMLETVKPKYFIPVHGEYRHLIKHSRLAVETGVAPERALVIEDGEPV
TFLLHGIRFEENIPVQCTLVDGKGVGDVGQTVLKERQLLAGEGLVIVAMVVDVNTGEILR
GPEVTSKGFVFEQHYSHLLEDAKCIVLDVFENIPPGQTGKLKERIRSALRRFFRKVLGRD
PVVIPLVISLTGNEQKDQDSKCDRCEL
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagccacagcttacagtctgccccttagggggactcggtgaaataggcctgaac
tgtatgctgctcagtacagcggaatctcttgttatcatcgactgcgggttgctttttccc
gatgatgcactcttcggagtagacattgccattccccgctttgaccatatccttagccag
aaagaccggcttaaagctatttttctaactcatggacatgaagaccatatcggcgccctt
ccgtggttgctgccctacgtggatgtgcctgtttacggttcccagtttacactgggactg
gttgaaaacaaagtgcgcgaacacaaccttgaaggttatgtggatttaagagaggtaaaa
gcttatgaccgggtcgacctcggagacatggctttcaacttttttccggtctgccactcc
atcatcgacggcttcggtttaggaattgaaacccctgtaggacgcgtagttcataccggt
gatttcaaaatagaccgagatccgcttgacgggcaggctaccgacctcaaagctttcaaa
gaattttccgaacagggtgtgacacttcttttttctgattcaactaatgttgaacaggag
ggattcgccctgacagagcgcgaaatcaaagggtccatgcgcagcctgtttgaagacgct
gaaggacgaattctggtaactctgttctccagccatattcagcgtatgcaggaaattttc
gaccttgcagaagagacaggcagaaaagtaggaatcagcggaaaatcactcgcccgaaac
atcgaccttgcccgtgatatgggcaaacttcgcgttccatcacgaaacataatcgaaacc
gatgaactgcctgattaccgggatgacgagatagtactgctggttaccggatcacagggc
gaatcactggcttccctttccagactttctaccggtgaacatcgccagctgaatatcaaa
gaaggcgaccttgtactaatgtcttcacgcttcattccgggcaacaccaaagcgatcaca
aaagtcatcaacaggctctacaagctcggggcggaagtcctttatgaaaaagcacaggga
attcatgcctccggtcatgctcataaagaagaactgcgcaccatgcttgaaacagtaaaa
cccaaatattttattcctgttcatggagaatacagacatcttatcaagcattcacgcctg
gctgttgaaacaggtgtggcccctgagcgagccttagtcattgaagacggcgagccggtc
acttttcttctgcacggtatccgttttgaagaaaatatccctgttcagtgcactctggta
gacggaaaaggtgtcggcgatgtgggacagactgtactcaaagaacgtcaattgctcgcc
ggcgaaggacttgtcattgtcgccatggttgtagatgtaaacacaggggaaatcctgcgc
ggacctgaagtgacgtctaaaggatttgtttttgaacagcactactcgcacctgctggaa
gatgctaagtgtatcgttcttgatgtttttgaaaacattcctccaggacagaccggaaag
ctcaaagagagaattcgttcagcactgcgcagatttttccgcaaggtgctcgggcgcgat
ccggttgtaatccctcttgttatctccctgaccggcaacgagcaaaaggatcaggactcc
aaatgtgacaggtgtgaattataa
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