Acidovorax ebreus: Dtpsy_0828
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Entry
Dtpsy_0828 CDS
T00853
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dia
Acidovorax ebreus
Pathway
dia03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Dtpsy_0828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dia03400
]
Dtpsy_0828
Enzymes [BR:
dia01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Dtpsy_0828
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Dtpsy_0828
DNA repair and recombination proteins [BR:
dia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Dtpsy_0828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
RNHCP
DZR
NFACT_N
HscB_4_cys
Zn_ribbon_6
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
ACM32306
UniProt:
B9ME52
LinkDB
All DBs
Position
859102..859917
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVEVTRRSFAGAIEGATVRGITVGKPLRWPLGTEPAVLVGRRVCGVRRRGKYLLL
DLDEGLLLIHLGMSGSLRFARDLPARGAHDHFELITDHGTLRLHDPRRFGAVVWAAGESD
PRARKLLDGWGLEPLGEDFAFEAFHAGLRAKRTPIKQLLLAGTVVVGVGNIYACEVLFLA
GIRPTTRACAIGPQRARRLHGAIREVLARAVERGGSTLRDFSSADGSAGHFQLEANVYGR
AGLQCRQCGTPVRLSRQGQRSTYFCPHCQRA
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctgccggaggtggaagtcacgcggcgcagcttcgctggcgcgatcgagggc
gcaactgtccgcggcattacggtgggcaagcccttgcgctggccgctgggcacggagccc
gcagtattggtcgggcggcgggtgtgcggtgtgcgccggcgcggcaaatacctgttgctg
gatctggatgaagggctgctgctcattcacctgggcatgtcgggcagcttgcgctttgca
cgcgatctgcccgcgcgcggcgcccacgatcatttcgaactgataacggaccacggcacg
ctgcggctgcacgacccgcggcgcttcggcgccgtggtctgggcggcgggtgagtccgat
ccccgtgcgcgcaagctgctcgatgggtggggattggagccgctgggcgaggacttcgcc
ttcgaggccttccacgcggggctgcgcgccaaacgcacgcccatcaagcaactgctgctc
gctggcacggtggtcgtgggtgtgggcaatatctatgcctgcgaggtgctgttcctcgcg
ggcatccggccaaccacccgcgcttgcgcgatcggaccccagcgtgcccggcgcctgcac
ggcgcaatccgcgaggtgctggcgcgcgcggtggagcggggcggcagcacgctgcgtgat
ttctctagcgccgacggcagcgccgggcatttccaattggaggccaatgtctatggccgc
gcgggcctgcagtgtcgccagtgcggtacgcccgtgcgtctgtcgcgccaggggcagcgc
agcacctatttctgtccgcactgccagcgcgcctga
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