Acidovorax ebreus: Dtpsy_2643
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Entry
Dtpsy_2643 CDS
T00853
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dia
Acidovorax ebreus
Pathway
dia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dtpsy_2643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dia03019
]
Dtpsy_2643
03009 Ribosome biogenesis [BR:
dia03009
]
Dtpsy_2643
Enzymes [BR:
dia01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Dtpsy_2643
Messenger RNA biogenesis [BR:
dia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dtpsy_2643
Ribosome biogenesis [BR:
dia03009
]
Prokaryotic type
rRNA processing factors
Dtpsy_2643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
ACM34078
UniProt:
A0A9J9UBZ7
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All DBs
Position
2804028..2807117
Genome browser
AA seq
1029 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAH
QFMAHVMPEHAGKVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQ
MLRMIQEESMKDSTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVVLIPNKSLETPH
YKLERLKHDDPRLENLDASYKLADVEEDQTKVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPEGAARGATRPQGHGQQRPATAPTPAPQRPAAAPAPEQGFFAWIKSLFGFGAAPAPAP
VAAPAQTPAEPGARGEGRRGERGGRRGERTGERSGERGGERNGNREGGEGRGRRSEGRGG
ERSAEGRENREPREPRNGRDGERRGDRAEGESRREPRDGRGGRERGERNAQPPVQSAADL
ANTPVTTDADVAVTEERTARTGERGERRERGERGERRERGGERGGERRERGPRTIDANAP
AAGADFADTAPLAALPDLDLSGAEVGTSGAEAPAGEERRERRSRDRYGRDRRERGERGPR
NAEASATGADAEAPAAPLMDLDLPAPAAPAEEDSAPARRSYFASAPASAPAAAPQAAPEA
TAAVTPLPAAVPAPAPAPAPVAAAPVPAPAPAAAAVAPATGGMPRVQAFTLPVDTLQQVA
QASGLQWVNSDAQKIAAAQAAIAAEPKPVHVPRERAPVVVLDEGPLVLVETRRDLGAMQL
PFDQGNAAA
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaatgccacgcagcccgaggagcggcgcctggccatcgtggac
ggccagaagctgctggactacgagatcgagatcgaagggcgcgagcagcgcaagggcaac
atctacaaagccgtcgtcacgcgcgtggaaccgtcgctggaggcctgcttcgttgactat
ggcgaagaccgccacggcttcctgccgttcaaggaaatctccaaacagtatttcgccgag
ggcgtatcacccagccaggccaggatccaggacgtgatcaaggaaggccaggagctgatc
gttcaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccaccttcatcagc
ctggccggccgctatgtggtgctgatgcccaacaacccacgcggcgggggcgtgtcgcgc
cgcatcgagggcgaggaccgcgccgagctcaaggaggcgatggaccagctggagtacccc
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgttccgcgcccgagttgcaa
tgggacctgaactacctgctcaagctgtggaccgccatcgatggcgccgccaaggccggc
aagggcgccttcctcatctaccaggaatccagcctggtgatccgcgccatccgcgactac
ttcaacagcgacatcggtgacatcctcatcgacaccgacgacatctacgagcaggcgcac
cagttcatggcgcacgtcatgcccgagcatgccggcaaggtcaagcgctaccgcgacgac
gcaccgctgttctcgcgcttccagatcgagcaccagatcgaatctgcctacgcgcgcacc
gtgaccctgccctcgggcggcgccatcgtgatcgaccacaccgaggctctggtcagcgtg
gacgtgaactcggcacgcgccatcaagggcggcgacatcgaggaaaccgccacgcgcacc
aacctggaggccgccgacgaggtggcgcgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggagagcaagaaccgccgcgaagtggaaaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcccgcgtgcagttcggcaccatcagcaagttc
ggcctcatggagatgagccgccagcgcctgaagccgtcgctgtccgaaggcgcgcatatc
cgttgcccgctgtgcgacggcaccggccacgtgcgcgacacggaaggcttctcgctgcag
atgctgcgcatgatccaggaagagtccatgaaggacagcaccgccgccgtgcactgccag
gtgccggtggaggtggccagcttcctgctgaacgaaaagcgcaccgagatcgccaagatc
gaactcaagcaacgcgtctccgtggtgctgatccccaacaagtcgctggaaacgccgcac
tacaagctggagcgcctcaagcacgacgacccgcgtctggaaaacctggacgccagctac
aagctggccgacgtggaggaagaccagaccaaggtcacgcgccgctcgcaggagcctacc
aacaagcagacgcccgtgatcaagggcgtgttgcccgatgcacccgcccctgtggccgag
ccgcgccccgaaggcgccgcccgcggcgccacgcgcccgcagggccacggccagcagcgc
ccggcaacagcccccacgcctgcgccccagcgcccggccgccgcaccggcgcccgagcag
ggcttcttcgcatggatcaagagcctgttcggctttggcgccgcacccgcgcccgcacct
gtggcggcccccgcgcagacgcccgcggaacccggcgcacgcggcgaagggcgtcgcggt
gagcgcggcggtcgccgtggcgaacgcactggtgaacgcagcggcgagcgtggcggtgag
cgcaatggcaaccgcgaaggcggcgaaggccgcggccgccgtagcgaaggccgtggcggc
gagcgcagcgccgagggccgcgagaaccgcgaaccgcgtgagccacgcaatggccgcgac
ggcgaacgccgtggcgatcgcgcggaaggtgagagccgccgcgagccgcgcgacggccgt
ggcggccgcgagcgcggtgagcgcaacgcacagccgcccgtgcagtctgcggccgatctg
gccaacaccccggtcacgaccgatgccgacgtggcagtgaccgaggagcgcacggcacgc
accggcgagcgcggtgaacgccgcgaacggggtgaacgaggcgagcgccgtgagcgcggt
ggcgaacgcggcggcgagcgccgcgaacgcggcccgcgcaccatcgacgccaacgccccc
gccgctggcgccgactttgccgacactgcgcccctggccgcattgccggacctggacctg
tccggcgctgaagtcggtacgtccggcgccgaggcccccgccggcgaggagcgccgcgag
cgccgttcgcgcgaccgctatggacgcgaccgccgcgaacgtggcgagcgcggcccgcgc
aatgccgaggccagcgccaccggtgccgatgccgaagcgcctgccgcgccgctgatggac
ctggacctccccgctcccgctgcgccggccgaggaagactccgcccccgcgcgccgcagc
tatttcgcctccgctccggcatctgccccggcggcagcgccgcaggccgcgcccgaagcc
acggccgcagtgacgccactcccggccgccgtgccagcccccgcaccggcgcccgcgccc
gttgcagcggcacctgtgcccgcaccggctccggctgccgctgcggtggcgccggcaacc
ggtggcatgccgcgcgtgcaggcattcacgctgcccgtggacacgctgcagcaggtggcg
caggcttcgggcctgcaatgggtgaattccgacgcccagaagatcgccgccgcgcaggcc
gcgattgcggccgagcccaagcccgtccacgtgccgcgcgagcgtgcgcccgtggtggtg
ctggatgaaggtccgctggtgctggtggaaacccgccgcgacctgggcgcgatgcagctg
ccgttcgaccagggcaacgcggccgcctaa
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