Dickeya poaceiphila: Dpoa569_0000228
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Entry
Dpoa569_0000228 CDS
T06188
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dic
Dickeya poaceiphila
Pathway
dic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dpoa569_0000228 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dic03021
]
Dpoa569_0000228 (rpoC)
03400 DNA repair and recombination proteins [BR:
dic03400
]
Dpoa569_0000228 (rpoC)
Enzymes [BR:
dic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dpoa569_0000228 (rpoC)
Transcription machinery [BR:
dic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dpoa569_0000228 (rpoC)
DNA repair and recombination proteins [BR:
dic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dpoa569_0000228 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
QDX28578
UniProt:
A0A5B8I0S1
LinkDB
All DBs
Position
261358..265581
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEHQKNAQGEWTQKTSLIDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKVEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEENSVDAVKVRSVVGCETDFGVCAKCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNAKFVMNSAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGNGDDVAGGETVANW
DPHTMPVITEVGGSIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGAQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVNPGSSEFLEGEQVEMSRIKIANRQLEADGKISATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGELPV
APQVSAEEASANLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgcgctggcctcgccagacatgatccgttcctggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccggaacgtgacggtctgttctgcgcccgt
atcttcgggccggtaaaagactatgagtgcttgtgcggtaagtacaagcgcctgaaacac
cgtggcgtaatttgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacattgagctggcgtctccgaccgctcacatctggtttttgaaatcgctg
ccgtcccgtatcggcttactgctggatatgccgctgcgtgatatcgaacgtgtactgtac
ttcgaatcttacgtggtagttgaaggcgggatgaccaacctggaacgccgtcagatcctg
accgaagaacaatatctggacgcgctggaagagttcggtgacgaattcgacgccaaaatg
ggtgccgaggctattcaggctctgctgaaaaacatggatctggagcaggaatgcgaacag
ctgcgtgaagagctgaacgaaaccaactccgagaccaaacgtaagaaactgaccaaacgc
atcaagctgctggaagcgttcgtgcagtccggcaacaagccggagtggatgatcctgacc
gtgctgccggtgctgccgccggatctgcgtccgctggtgccgctggatggtggtcgtttc
gcgacctccgatctgaacgatctgtaccgccgtgtgatcaaccgtaacaaccgtttgaaa
cgtctgctggatctggctgctcccgatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggtagatgcgctgctggataacggtcgtcgtggtcgtgccatcactggttccaac
aagcgtccgctgaaatctttggccgatatgatcaaaggtaagcaggggcgtttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttccgttattaccgtaggtccgtac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagcagtggtatgggatatcctggatgaagttatccgcgagcacccg
gtactgctgaaccgtgcgccgaccctgcaccgtctgggtattcaggcgttcgaaccggtt
ctgatcgaaggtaaagcgattcagttgcacccgctggtgtgtgcggcatataacgccgac
ttcgacggtgaccagatggccgttcacgtaccgttgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtccaccaacaacattctgtcgccggcgaacggcgagccgatcatc
gttccgtctcaggacgtggtgctgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgaccggtccgaaagaagcagagcgtatttatcgtgccggt
ctggcttcgctgcacgctcgcgtaaaagtacgtattaccgagcatcagaagaatgcgcag
ggcgagtggacgcagaaaaccagcctgatcgacactaccgtaggtcgtgcgattctgtgg
atgatcgtgccgaaaggtctgccttattccatcgtcaatcaggcgctgggtaagaaagct
atctccaagatgctgaacacctgctaccgcgtgctgggtctgaaaccgacggttatcttt
gccgaccagatcatgtacaccggttttgcttacgcggcgcgttccggttcttccgttggt
atcgacgatatggtgatcccggcgaagaaagtggaaatcatcagcgaagcggaagccgaa
gttgccgagattcaggagcagttccagtctggtctggtaaccgcgggcgaacgctacaac
aaagttatcgatatctgggctgcggctaacgagcgcgtggctaaggcgatgatggaaaac
ctctctaccgaaaccgttatcaaccgtaatggcgaagaagagaaacaggtgtccttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gcagggatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcgctgaaaacggcgaactccggttacctgacgcgtcgtctg
gttgacgtggcgcaggacctggtggtgaccgaggacgattgcggtacccacgaaggcatc
atgatgacgccggttatcgaaggcggcgacgtgaaagagccgctgcgtgagcgagtactg
ggccgtgtgacggcagaagacgtgctgaaaccgggcaccgcagacattctggttccgcgc
aatacgctgctgaacgaaaaatggtgtgacctgttagaagaaaactcggtcgatgcagtg
aaagtacgctcggtagtaggttgtgaaaccgacttcggcgtgtgcgccaagtgctatggt
cgtgacctggcacgtggtcatatcatcaacaaaggcgaggctatcggggttatcgcggcg
cagtccatcggtgaaccgggtactcagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggcagcagaatccagtattcaggtgaaaaacaaaggtagcctgaaactg
agcaacgctaagttcgttatgaacagcgccggtaaactggtgattacttcacgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
gcagtcatggcgaaaggtaacggtgacgatgtcgccggcggtgaaaccgtcgcgaactgg
gacccgcataccatgccggttatcaccgaagtgggcggtagcattcgcttcaccgatatg
atcgacggccagacgattacgcgtcagaccgacgaactgaccggtctgtcctccattgtg
gttctggatagtgcagaacgtaccggtggtggtaaagacttgcgtccggcgctgaaaatc
gttgatgccaacggtaatgacgtactgattccgggtaccgatatgccggcgcagtacttc
ctgccaggtaaagcgattgttcagttggaggacggtgcacagatcggtgcgggtgatacc
ctggcgcgtattccgcaggagtccggcggtaccaaggatattaccggtggtctgccgcgc
gttgctgacctgttcgaagcccgtcgcccgaaagagccggcgattctggcagaaatcagt
ggcgtggtatccttcggtaaagaaaccaaaggtaaacgccgcctggtgatcacgccggtt
gatggcagcgaaccatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgcgtggaacgcggcgatgtgatctccgacggtcctgagtctccgcacgatatc
ctgcgtttgcgtggcgtacacgcggtgacccgctacattgttaacgaagtgcaggaagtt
taccgactgcagggcgttaagattaacgataaacacattgaggttatcgttcgtcagatg
ctgcgtaaaggcaccatcgtcaatccgggtagctccgagttcctggaaggcgagcaggtg
gaaatgtcgcgtatcaagatcgccaatcgtcagttggaagcggatggcaagatttcggct
acctacagccgcgatctgctgggtatcaccaaggcgtctctggctaccgaatccttcatc
tccgcagcgtcgttccaggaaacgacccgcgtactgacggaagcggcggttgcgggtaaa
cgtgatgagctgcgtggcctgaaagaaaacgtcatcgtgggccgtctgatcccggctggt
acgggttatgcgtatcatcaggatcgtatgcgtcgccgtcaggcaggtgaactgccggtt
gcaccgcaggtcagtgccgaagaagcgtctgccaatctggctgagctgctgaatgctggt
ctgggtggtagcgacgacgaataa
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integrated database retrieval system
