Dickeya poaceiphila: Dpoa569_0000275
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Entry
Dpoa569_0000275 CDS
T06188
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
dic
Dickeya poaceiphila
Pathway
dic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dpoa569_0000275 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dic03019
]
Dpoa569_0000275 (rhlB)
Enzymes [BR:
dic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dpoa569_0000275 (rhlB)
Messenger RNA biogenesis [BR:
dic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dpoa569_0000275 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDX28616
UniProt:
A0A5B8HFL7
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All DBs
Position
complement(316762..318048)
Genome browser
AA seq
428 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALENKGFYNCTPIQALALPLALSGRDVAGQAQTGTGKT
LAFLASTFHYLLTHPAPAERQTNQPRALIMAPTRELAVQIYTDAEALAKATGLRLGLAYG
GDGYDKQLKVLEDGVDILIGTTGRLIDYTKQNHVHMGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTQGHLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGASGYSISLA
CEEYALNLPAIEDYIGHRIPVSKYSSEALLADLPEPKRLSRPRSSGGPRRPGAPRRSGAP
RSNRKRPG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaaccgaacagaagttttccgacttcgcactgcatccgcaggtt
attgaagcacttgaaaataaaggcttttataactgcacacccattcaggcgctggcatta
ccgctggcgctgtcaggccgtgacgtggcgggccaggcgcaaaccggaacaggcaagacg
ctggcatttctggcgtctacatttcattatttgctgactcaccccgcccccgccgaacgc
cagaccaaccaaccccgtgcactgatcatggcgccgacccgtgaactggcggtacagatc
tataccgatgccgaagcactggcgaaggcgactggtctgcgactggggctagcttacggt
ggcgacggctacgacaagcagctaaaagtgctggaagacggcgtcgatattcttatcggt
accaccggtcgtttaatcgattacaccaagcagaaccatgtccatatgggcgctattcag
gtagtggtgctggatgaggctgatcgcatgtacgatcttggctttatcaaagatatccgc
tggttgttccgccgtatgccgccggctaatcaacgtctgaacatgctgttttccgccacc
ttatcctaccgcgtgcgtgaactggcgtttgagcagatgaacaacgccgaatacgtcgag
gtggaaccggagcaaaaaaccggtcatcgcatcaaggaagagctgttttatccttccaat
gaagagaagatgcggctgctgcaaacgttgatcgaagaagagtggccagatcgctgcatc
atctttgccaacacaaaacaccgttgtgaagacatctggggccatctggccgcagacggc
catcgtgtcggcctgctgaccggcgatgtggcgcagaaaaagcggctgcgcatactcgaa
gagttcactcagggtcatctggatattctggtggcgaccgatgtggcggcgcgaggtctg
catattccgtccgtgacccacgtgttcaactacgacttacctgatgattgcgaagactac
gtacaccgtatcggtcgtaccggtcgtgctggcgccagcggctattccattagcctggcc
tgcgaagagtacgcactgaatctgccagcgattgaagattatatcggccaccgtattccg
gtgagcaaatacagcagcgaagccttgctggctgacctgccggagccaaaacgtctgagc
cgcccgcgctccagcggtggcccacgccgacccggcgcgcctcgccgtagcggtgcgccc
cgcagcaatcgaaaacgaccgggttga
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