Dickeya poaceiphila: Dpoa569_0000867
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Entry
Dpoa569_0000867 CDS
T06188
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dic
Dickeya poaceiphila
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dic03016
]
Dpoa569_0000867 (thpR)
Enzymes [BR:
dic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Dpoa569_0000867 (thpR)
Transfer RNA biogenesis [BR:
dic03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Dpoa569_0000867 (thpR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QDX29147
UniProt:
A0A5B8I7L1
LinkDB
All DBs
Position
complement(967826..968359)
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AA seq
177 aa
AA seq
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MTSTRRLFFGLSLPDAVSQQIVHWRATQFSPEAGRPVAAANLHLTLAFLGEVSDAKMQVL
TALAGRIRQPAFTLNLNDAGHWPRPGVVWLGCRQAPRGLLQLADMLRSQAARNGCYQPPQ
PFHPHITLLRGATRPLPLPAATFGWTMRAEQFFLYESRTEAGRTHYQPVAHWPLLTS
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaacccgccgcctgttttttggcctgtcgttaccagacgctgtcagccagcag
atcgtacactggcgtgcgacgcaattctccccggaagccgggcgtccggtggcggcggca
aacctgcatctgacgctagccttcctcggcgaggtcagcgacgcaaaaatgcaggtgtta
acggcgctggccggtcgtatccgccagccggcgtttacccttaatctgaacgatgccggt
cactggccgcgccccggcgtggtatggctcggttgccgtcaggcgccgcgcgggctgctg
caactggcagacatgctgcgttcacaggcagcgcgcaacggctgctaccagcctccccag
ccctttcacccacacatcacgctgctgcgcggcgccacacgtccgctgccgctgccagcc
gccaccttcggttggacgatgcgcgccgagcaattctttctttatgaatcacgaaccgaa
gcgggtcgaacccattatcagcctgtcgcccactggccgttgctgacttcctga
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integrated database retrieval system
