Dickeya poaceiphila: Dpoa569_0000896
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Entry
Dpoa569_0000896 CDS
T06188
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
dic
Dickeya poaceiphila
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dic03009
]
Dpoa569_0000896 (srmB)
Enzymes [BR:
dic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dpoa569_0000896 (srmB)
Ribosome biogenesis [BR:
dic03009
]
Prokaryotic type
rRNA helicases
Dpoa569_0000896 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
AAA_22
CMS1
UBA_7
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDX29168
UniProt:
A0A5B8I535
LinkDB
All DBs
Position
complement(997023..998375)
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AA seq
450 aa
AA seq
DB search
MTATNFSEFDLDDSLLDALRDMGFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLL
PVLQHLLDFPRKKSGPPRILILTPTRELAMQVADQARALAAHTHLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTMLFSATLEGDAIQDFAERLLNDPIEVEAEPSRRERKKILQWYYRADDVQHKTALLS
HLLKQPDVTRSIVFVRKRERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVK
VLVATDVAARGLDIQDVSHVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDYLLL
EKIGRYLNEPLKARVVDELRPTTRAPSPKSNGKPSKKVLAKRKEQKQKEKEKQKTKVKVR
HRDSKNIGKRRQPSATASVELPTEKPADNS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgaccaatttttccgagtttgatcttgatgacagcctgcttgacgccttgcgc
gacatgggcttcagccgtccaaccgccattcaggccgaggccattcccccagcgatggaa
gggcgggatgtgctgggttccgcaccgaccggaaccggcaaaaccgccgcctacctgctg
ccggttttacaacacttgctggattttccacgtaaaaaatccggtccgccacgaatcctg
attctgacaccaacacgagagctggcgatgcaagtggcggatcaagcgcgggcgctggct
gcacatacccatctggatattgcgaccatcaccggcggtgtggcttatatgaatcacgcc
gaagtattcagcgagaatcaggatgtggtggtcgccactaccggacgtctgttgcaatac
atcaaagaagaaaattttgactgtcgtgcagtagaaaccctgattctggatgaagccgac
cgcatgttggacatgggattcgcccaggacattgagcatattgccggagaaacccgctgg
cgcaagcaaaccatgctgttctccgcaacgctggaaggcgacgctattcaggattttgcc
gagcgactgctgaacgaccctatcgaagtggaagccgaaccgtcacggcgcgagcgtaaa
aaaatcctgcaatggtactaccgcgctgatgatgtgcagcacaaaaccgcactgctgagc
cacctgctcaaacagccggacgtaacccgttccatcgtgttcgtgcgcaaacgcgagcgg
gtgcatgaactggtagactggttgcgctctgctggtatcgaatcctgctatctggaaggg
gaaatggtacaggctaaacgcaacgaagccatcaaacggttgagcgaaggccgggtgaaa
gtattggttgccaccgacgtcgccgcacgcggactggatattcaggacgtcagccacgtg
ttcaacttcgatttaccacgaacgtcagacgtttacctgcatcgtatcgggcgtaccggg
cgggcggggcgtaagggttgcgccatctcgctggtagaagcgcatgattatctgctgctt
gaaaaaattggccgttatctcaatgaaccgttgaaagcccgcgtggtggatgaactacga
ccgactacccgtgcgccaagccctaaatctaacggcaagccatcgaaaaaagtgctggct
aagcgcaaagagcagaagcaaaaagagaaagaaaagcagaaaacgaaggtcaaggtacgc
caccgcgacagcaaaaatattggtaaacgccgtcaacccagcgccacagcatcagttgag
ctaccgacagaaaaaccagcggataacagctga
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