Dickeya poaceiphila: Dpoa569_0001880
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Entry
Dpoa569_0001880 CDS
T06188
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dic
Dickeya poaceiphila
Pathway
dic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Dpoa569_0001880 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dic03400
]
Dpoa569_0001880 (recB)
Enzymes [BR:
dic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Dpoa569_0001880 (recB)
DNA repair and recombination proteins [BR:
dic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Dpoa569_0001880 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QDX30029
UniProt:
A0A5B8HM88
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All DBs
Position
2082654..2086337
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AA seq
1227 aa
AA seq
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MTARSLPSPLDVLRFPLSGSRLIEASAGTGKTFTIAMLYVRLVLGHGSEQAFSRPLTPPE
ILVVTFTDAATRELRDRIRARLAQAAGYFQPDGKDGKDEEADPLLRELRTGYPPEQWPDC
ARKLQLAAEWMDEAAVSTIHSWCNRMLGEHAFDSGSLFNQTLETDQRELLLEVVRDYWRT
FFFPLDARDVLELRDSWASPDDFYRSVTPLLEYADEMGIDDLPAQIFSAVREEKTHRLAA
LKAPWPQWCDELRELLNAAVAEKKADGRKLQARYFGPWLDKLHHWATSDETTLDIGTGWT
RLTPQGLRECWKVPEDAPQHPALSAMETLAQQLSELPEPRSQLLRHACRWVSQRFRHEQD
SRAQMGFQDLLTRLDAALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRVA
NNDPQQGLILIGDPKQAIYAFRGADIYTYLRARRDTEGRHYTLGTNFRSTQAMVDAVNQV
FMQAENRADGAGAFLFRQPDGDNPVPFLPVQANGRDESWVLEGAQAAALTCWMLETEEPL
SSAEYRQRMAAGCAREMVRLLQLGVQGQAGFTVPGQAWRPVRPGDMAVLVNTGREAMAVR
AQLSARGVRSVYLSDRESVFDSPQASELHCWLAACADPENDRLLRAALATPLLGMSWQAL
ERLNHDEQEWENRVMQFVRYQNCWRQQGVLPMLRRLMWEFDVPRRLLVADNARALTDVLH
LSELLQQASVHLDGEHALIRYLAEQCQADNPGGDTLKLRLESDADLVKVVTVHKSKGLEY
PLVFLPFACAFRAVSHRDVPLKFHDDDGQLRLELTASDEAVQRADHERLGEDLRKFYVAL
TRARYALWLGIAPLKALEKSAPGYLLGAGEPLEPGQLAQRLSAWCGAHSQIAPLPETDAA
IYRAVRTLPSLGQEPPLPDISRHRWRITSYSGLQLAPEGHYHERRELFANETPEVQSAQQ
ETFSEPQEAAERLPPLPTGHDMYSFPRGAVPGSFLHGLLEWAGETGFAALAGDRPGVEDQ
VARRCNRQGWTQWIPMLTDWLMALLNQPLALPAQPDSAVSLAGLTQYQVEMEFWFALNQV
DTPTLDQLVRAATLAGEPRTALVREQLNGMLKGFIDLVFEHQGRYYVLDYKSNWLGASAA
DYDTPRMAHAMLDHRYDLQLVLYLFALHRLLKSRLPDYDYDRHVGGALYLFLRGSQAPGG
GVYAERPDRELIEALDCLFSGGSEVTA
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgcgttcgttaccttctccgctggatgtgctgcgctttccgctctccggcagc
cggttaattgaagccagcgccggcaccggcaaaaccttcaccatcgccatgctgtatgta
cggctggtgctggggcacggcagcgagcaggcgttttcccgcccgctcaccccgccggaa
attctggtggtgacctttaccgatgccgccacccgcgagctgcgtgaccgcattcgcgcc
cggctggcgcaggcggctggctattttcagccggatggcaaagatggcaaggatgaagag
gccgatccgttgttgcgggaacttcgcaccggttacccgccggaacagtggccggactgt
gcgcgcaaactacaactggccgccgaatggatggacgaagcggcggtatccaccatccac
agctggtgtaaccggatgctgggcgaacatgcgtttgacagcggcagcctgtttaaccaa
acgctggaaaccgaccagcgtgaattgttactggaagtcgtgcgtgattactggcgcacc
ttctttttcccgctcgatgcccgcgatgtgctggaactacgtgatagctgggcatcaccg
gacgatttttaccgcagtgtgacgccgctgctggagtatgccgatgaaatgggtatcgat
gacctgccagcacagattttcagcgctgtccgtgaagaaaaaacgcaccgactggcggcg
ctaaaagcgccctggccgcagtggtgcgacgaactgcgcgagttgctgaacgcagcggtg
gcagagaaaaaggcggatggccgcaagctgcaagctcgttatttcggcccgtggctggac
aaactgcaccactgggccaccagcgatgagacgacgttggatatcggcaccggctggacg
cggctgaccccgcaagggctacgggagtgctggaaagtgcccgaagacgcgccgcagcac
ccggcactgagtgcgatggagacgctggcgcagcagttaagcgaattaccggagccacgt
agtcaactgttacgtcatgcctgccgttgggttagtcagcgttttcgtcacgagcaggat
agccgggcgcaaatgggttttcaggatctgctgacccggctggatgccgcattgcgcggc
gataacggcgaacggctggcgcagcgtattcgccgacagtttccggtagcgatgatcgac
gaatttcaggacaccgatccattgcaataccgcattttcgataccctgtaccgggtggcg
aacaacgatccacagcaggggctgatcctgataggcgacccgaaacaggcgatttacgcg
tttcgcggtgcggatatctatacctatttgcgcgcccgccgcgataccgaggggcgacat
tacacactgggtactaacttccgctccacgcaggcgatggtcgatgccgttaatcaggtg
ttcatgcaggcggaaaaccgcgctgacggcgcgggtgcatttttgtttcgccagccggac
ggtgacaatccggtgccgtttctgccggtgcaggccaatggccgtgatgaaagctgggtg
ctggagggggcgcaagcggcggcgttgacgtgctggatgctggaaaccgaggagccgctg
tcgtcggcggaataccgtcagcgcatggctgctggctgcgcccgcgaaatggtgcggttg
ttacagctcggcgtgcaggggcaggccggttttactgtaccagggcaggcatggcgtccg
gtcagaccgggagacatggcggtgctggtcaataccgggcgtgaggcgatggcggtgcgg
gcgcaattgtccgctcgcggcgtgcgcagcgtttatctgtcggacagagaatcggtgttc
gacagtccacaagccagtgagctgcactgttggctggctgcctgtgctgatccggagaat
gatcggttgttgcgcgccgcgctggcaaccccgttactggggatgagctggcaggcgctt
gaacgccttaaccacgacgagcaggagtgggaaaaccgggtaatgcaatttgttcgctac
cagaactgctggcgacagcaaggcgtgttgccgatgttacggcgcttgatgtgggagttc
gatgtgccgcgccggttactggttgccgataacgcccgtgcgctgaccgatgtgctgcac
ctctcggagctgttgcaacaagccagcgtgcatctggatggcgaacacgcgctgatccgc
tatctggcggaacagtgtcaggcggataaccccggtggcgacacgctgaaactgcggctg
gaaagcgatgccgatctggtgaaggtggtgaccgtccacaaatctaaaggactggaatat
ccgctggtgtttctgccgttcgcctgtgcgtttcgtgccgtcagccaccgcgatgtgccg
ctgaaatttcatgatgatgatgggcagctgcgccttgagctgaccgccagcgacgaggcg
gtgcagcgtgctgaccatgagcggctgggcgaggacttgcgtaagttttatgtggcgttg
actcgcgcccgctacgcgctgtggcttggcatcgcgccgctgaaagcgctggaaaaaagc
gcgcccggttatctgctcggcgcgggcgagccgctggagccgggacaactggcgcagcgg
ttgtcggcctggtgcggcgcgcatagccagatagcgccgttgccggaaacggatgcggcg
atttatcgcgcggtgcggacgttgccgtcgctgggtcaggaaccgccgttgccggatatc
agccgccaccgctggcgcattaccagctattccgggttgcaactggcgccggaagggcat
taccacgaacgtcgtgagttgtttgcgaacgagacgcctgaagtacaaagcgcgcagcag
gaaactttcagtgaaccgcaggaagccgcagagcgtctgccgccgttgccgaccggtcat
gatatgtacagttttccgcgcggagcggtgccgggaagctttctgcacggcttgctggag
tgggcaggggaaacggggtttgcggcgctggcgggggatcggcctggtgtggaagatcag
gtggcaaggcgctgtaaccggcagggctggacgcaatggataccgatgctcaccgactgg
ctgatggcgctgctcaatcaaccgttggcgttgccggcgcaacctgacagcgcggtgtcg
ctggctgggctgacgcagtatcaggtggaaatggagttctggtttgcgctcaatcaggtt
gatacacccacattagatcaactggttagagccgccacgctggcgggcgagccgcggaca
gcgctggtgcgcgaacaacttaacggtatgttgaaagggtttatcgatttggtatttgaa
catcaggggcgttactacgtgctggactacaaatccaactggctgggggcgagcgccgcc
gactatgacacaccgcgaatggcccacgccatgctggatcaccgttacgatctgcaactg
gtgctatacctgtttgccttgcaccgcttactcaaatcccgcctgccggattatgactat
gaccgccatgtcggtggcgcgttgtacctgtttctgcgcggtagtcaggcgccgggcggc
ggtgtgtacgccgagcggccagaccgagagctgattgaagcgctggattgcctgtttagt
ggtggatcagaggtgacggcatga
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