Dickeya poaceiphila: Dpoa569_0001970
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Entry
Dpoa569_0001970 CDS
T06188
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dic
Dickeya poaceiphila
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dic03032
]
Dpoa569_0001970 (topA)
03400 DNA repair and recombination proteins [BR:
dic03400
]
Dpoa569_0001970 (topA)
Enzymes [BR:
dic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Dpoa569_0001970 (topA)
DNA replication proteins [BR:
dic03032
]
Prokaryotic type
DNA Topoisomerases
Dpoa569_0001970 (topA)
DNA repair and recombination proteins [BR:
dic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Dpoa569_0001970 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
E217_gp28
Motif
Other DBs
NCBI-ProteinID:
QDX30107
UniProt:
A0A5B8IBE5
LinkDB
All DBs
Position
complement(2190566..2193169)
Genome browser
AA seq
867 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSGSTTKKGVEANGEKAKKA
VKKDEKTALVNRMGVDPYHGWQAHYEILPGKEKVVSELKTLAQNADHVYLATDLDREGEA
IAWHLREIIGGDDKRFSRVVFNEITKNAIRQAFDNPGELNINRVNAQQARRFMDRVVGYM
VSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPQEYWELHADLLTSTDIALQMQV
THHNGKPFRPVNQVQSQAAVALLEKASYVVAEREDKPTSSKPGAPFITSTLQQAASTRLG
FGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALAMARDYIQGEFGKRYLPDAPNLYTSK
ENSQEAHEAIRPSDVSVLAEQLKDMEADAQKLYQLIWRQFVACQMMPAQYDSTTLVVSAG
DYQLRAKGRTLRFDGWTKVMPALRKSDEDRTLPAVDVGQSLSLEKLLPSQHFTKPPARYS
EASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELM
NYDFTARMENSLDLVANSQAEWKAVLDEFFAEFSKQLETAEMEPDEGGMKPNQVVLTSID
CPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLIPEAEVLNVLEGDEAETNALRA
RRRCAKCGTAMDSYLIDNQRKLHVCGNNPSCDGYEIEQGEFRLKGYDGPVVECEKCGSEM
HLKMGRFGKYMACTGENCSNTRKILRNGEVAPPKEDPVPLPELLCEKSDAYFVLRDGAAG
VFLAANTFPKSRETRAPLVEELVRFRDRLPEKLRYLADAPVTDPEGNKTLVRFSRKTKQQ
YVASEKEGKATGWSVFYVDGKWGESAR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgattaataagtat
cttggcaatgactacgtggtgaaatccagcgtggggcatgtacgtgacttgccgaccagc
ggttcaggctccacaactaagaaaggcgttgaggccaacggcgagaaagccaaaaaagca
gttaagaaagatgaaaaaactgcgctggttaaccgtatgggggtagacccgtatcacggc
tggcaggcccattacgagatcctgcctggcaaggaaaaagtggtatcggaactgaaaacg
ctggcgcagaacgccgatcatgtctatctcgcaaccgaccttgaccgcgaaggggaggcc
attgcatggcacctgcgggaaattatcggtggcgatgacaagcgtttcagtcgtgtggtg
ttcaatgagattactaaaaatgctattcgtcaggcgtttgataatccaggtgaactgaat
atcaaccgtgtcaatgcccagcaggcgcgccgttttatggatcgtgtggtggggtacatg
gtgtcgccgctgctgtggaaaaaaattgcccgcggtttatcagccgggcgagtgcagtcg
gtggcagtgcgtctggtcgtggagcgtgaacgcgaaatcaaagcgtttgtaccgcaagag
tattgggaattacatgcagacctgctgacgagtactgatatcgcgctgcaaatgcaggtt
acgcatcacaatggcaaaccgttccggccagtaaatcaggtacagtcgcaggccgcggtt
gcgttgctggaaaaagccagctatgtggtggcggaacgcgaagacaaacccaccagcagc
aagccgggcgctccgtttattacgtctacgttgcagcaagccgccagcacccgcctgggc
tttggggtgaaaaaaaccatgatgatggcgcagcgcttgtatgaagctggccatatcacc
tatatgcgaaccgactccaccaacctgagccaggatgcgctggcgatggcgcgtgattat
atccagggtgagttcggtaagcgttatctgccggatgcgcccaatctctacaccagtaag
gaaaattcacaggaagcgcacgaagctattcgaccttctgacgttagtgtattggccgaa
caactcaaagacatggaagctgatgcgcaaaaactgtatcaactgatttggcggcagttt
gtggcttgtcagatgatgccagcccaatacgactccaccacactggtagtgagtgccggt
gattatcaattgcgcgccaaggggagaaccctgcgttttgatggctggaccaaagtgatg
cctgcgctgcgtaagagcgatgaagatcgcaccttgccagcggtagacgtggggcaatct
ttgtcgctggaaaaactgttgccaagccagcactttaccaaaccgccagcgcgttacagt
gaagcgtcgttggttaaggagttggaaaagcgtggtattggccgaccttcgacgtatgcc
gctattatctccaccattcaagatcgtggttatgtgcgggtggagaatcgccgtttctat
gcggaaaaaatgggtgaaatcgttactgatcggctggaagagaacttccgcgagctgatg
aactacgatttcactgcccgtatggaaaatagcctcgatttggtagcgaatagtcaggcc
gaatggaaggccgtgctggatgagttcttcgccgagttcagtaaacagctggaaactgcc
gagatggagcctgatgagggtggcatgaagccgaaccaggtggtgctgaccagcattgat
tgtccaacctgtggccgcaaaatgggaattcgtactgccagtactggggtattcctcggt
tgctccggttatgcgctgccgcctaaggagcgttgcaaaaccaccatcaacctgattccg
gaagccgaagtgctaaacgtgttggagggggatgaggctgaaactaatgcgttgcgcgct
cgtcgtcgttgtgcgaagtgtggtaccgcaatggacagctacctgattgataatcagcgt
aaacttcatgtgtgtggtaacaacccgtcctgcgatggctatgagattgagcaaggcgaa
ttccggcttaaaggttatgacggcccggtggtggaatgcgagaaatgcggttccgaaatg
cacctgaaaatggggcgtttcggtaaatatatggcctgtaccggtgagaattgcagcaat
acccgcaaaattttgcgtaatggcgaagtcgcgccgccgaaagaagatccggtgccgctg
ccggagttgttgtgcgaaaaatccgatgcttattttgtgttgcgtgatggcgcggctggt
gtgttcctggctgcgaatacgttcccgaaatcgcgggaaacgcgtgcgccactggtggaa
gagctggtgcgttttcgtgaccgtctgccggaaaaattgcgttatctggccgatgcgccg
gtaacagatccggaaggcaacaaaacgctggtgcggtttagccgaaagaccaaacagcag
tatgttgcttctgaaaaagaaggcaaggcgacgggatggtcggtgttctatgtcgatggg
aaatggggtgaaagtgcccgttaa
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