Dickeya poaceiphila: Dpoa569_0002267
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Entry
Dpoa569_0002267 CDS
T06188
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dic
Dickeya poaceiphila
Pathway
dic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dpoa569_0002267 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dic03019
]
Dpoa569_0002267 (rhlE)
Enzymes [BR:
dic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dpoa569_0002267 (rhlE)
Messenger RNA biogenesis [BR:
dic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dpoa569_0002267 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Cas3-like_C_2
HEM4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QDX30380
UniProt:
A0A5B8IE46
LinkDB
All DBs
Position
complement(2515955..2517319)
Genome browser
AA seq
454 aa
AA seq
DB search
MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSERPVMAKGRRPVRALILTPTRELAAQIGENVLAYSKYLRLRSLVVFGGVSINPQMM
KLRGGVDILIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPPK
RQNLLFSATFSDEIKELAGKLLDNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLI
GKHNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGEIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDI
ERLLKREIPRIAIAGYEPDPTIKAEPIQNGRQGGRGSRGGAPRQGERPQSERAAGRSQGD
RPHQPRREGAARPTGRPEGQPARRRAPRKPASGQ
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatctctcggtctgagtgccgatattttgcgcgctgtggaagagcagggc
tatcgtgagccgacgccggttcagcgtcaggcgattccggtagtgctggaagggcgcgac
ctgatggccagcgcccagaccggaaccggtaaaaccgcgggtttcacgctgccgttgctg
caattgctgagtgaacgccctgtgatggcgaaaggccgccgtccggtacgggcgttgatc
ctgacgccaacccgtgaactggccgcacagatcggcgaaaacgtgctggcgtacagcaag
tatctgcgtctgcgctcgctggtggtgttcggcggcgtcagcattaatccgcagatgatg
aagctgcgtggcggcgtcgatattctgattgccacgccgggtcgtctgctggatttggaa
caccagaacgcggttgacttgtctcaggtggaaattctggtgctggatgaagcggatcgc
atgttggacatgggctttatccacgatatccgtcgggtactggcgaagttgccgccgaaa
cggcagaacctgctgttttccgctacgttctctgatgaaatcaaagaactggccggcaag
ttgcttgataacccggcttcggtggaagtggtgcgccgcaatactccgtccgagctggtg
acccagcacgtgcactttgtggacaaaaaacgcaagcgcgaactgttgtcgcacctgatt
ggtaaacacaattggcagcaggtgctggtgtttacccgtaccaagcacggtgccaaccat
ctggcggaacaactgaacaaagacggcatcactgccgccgctatccacggcaacaagagc
cagggggcgcgtacccgtgcgctggctaatttcaaggacggcgagattcgggtgctggtg
gcgaccgatatcgcggctcgtggattggatatcgaccaactgccgcatgtcgtgaactat
gaactgccgaatgtgccggaagattatgtgcaccgtattggccgtactggtcgggcggcc
tctaccggtgaggcgttgtcattggtatgcgtcgatgagcataaactattgcgcgacatc
gaacgtctgttaaagcgggaaatcccgcgtattgcgattgcgggttacgaaccggacccg
accatcaaggccgaaccgatccagaatggccgacaaggtgggcgtggcagtcgcggcggg
gcgccgcgtcagggcgagcgaccgcaaagtgagcgtgccgccgggcgttcgcagggagat
cgtccccaccagccgcgccgtgagggtgccgcgcgtccgacgggccgtccggaaggacaa
cccgcccgtcggcgagcgccgcgcaaaccagccagtggtcagtaa
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