Dickeya poaceiphila: Dpoa569_0003312
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Entry
Dpoa569_0003312 CDS
T06188
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dic
Dickeya poaceiphila
Pathway
dic03410
Base excision repair
dic03430
Mismatch repair
dic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Dpoa569_0003312 (recJ)
03430 Mismatch repair
Dpoa569_0003312 (recJ)
03440 Homologous recombination
Dpoa569_0003312 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dic03400
]
Dpoa569_0003312 (recJ)
DNA repair and recombination proteins [BR:
dic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Dpoa569_0003312 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Dpoa569_0003312 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dpoa569_0003312 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QDX31305
UniProt:
A0A5B8HQG0
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All DBs
Position
complement(3650399..3652129)
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AA seq
576 aa
AA seq
DB search
MNVVTQLRRRPVTETELPDSLPALLRRLYAHRGVRQMQELERSLRGLLDYRQLSGIAQAV
DVLHQALADHRRIVIVGDFDADGATSTALTVLALRSMGGREIQYLVPNRFEDGYGLSPEV
VAQAAARGAELIVTVDNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLPD
CAFASKALAGVGVAFYLMMALRAKLRESGWFAERGLAEPNLAELLDLVALGTVADVVPLD
ANNRILVAQGLSRIRAGKCRPGIRALLEVSNRDATQLVASDLGFALGPRLNAAGRLDDMS
VGVELLLCDDIVQARMLASDLDALNQSRREIEAGMQVEALHLCDQLERSRDTLPLGLAMY
HPQWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPG
LMLKFGGHAMAAGLSLAEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELAAPELSLGT
AEMLREAGPWGQAFPEPVFDGRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLL
WPDSSVREVELAYKLDVNEFRGKRSVQLLIEHLWPL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgttgttacccaactccgtcgccgcccggtgacggagacggaattacctgactct
cttcctgcgttattacggcgtttatacgcccatcgcggcgtgagacagatgcaggaactg
gaacgcagcctgcgcggcttgctggattatcgtcagcttagcggtattgcgcaggcggtt
gacgtattacatcaggcactggcggaccatcgccgcatcgtgatcgtcggcgatttcgat
gccgacggcgctaccagtaccgcgctgacggtgctggcgctgcgcagcatgggtggccga
gagattcagtatctggtgcctaaccggtttgaggatggctacgggcttagccctgaagtg
gtagcgcaggctgctgccagaggcgcggagctgatcgtgaccgtcgataacggcatttcg
tcccatgccggggtggacgatgcgcaccggcgcggcattgcggtggtagtgaccgaccac
catctgccaggggaaacgctgccggcggcggaggcgatgatcaaccctaacctgccggac
tgtgcgtttgcgtcgaaggcgctggctggcgtcggcgtcgcgttttacctgatgatggcg
ttgcgcgctaagctgcgggagtccggctggtttgccgagcgcggtctggctgagcctaat
ctggccgaattgctggatctggtagcgttgggcacggtggcggacgtggtgccgctggat
gccaacaaccgcattctggtcgcgcaaggcttgagccggattcgtgcgggtaaatgtaga
ccggggattcgcgccctgctggaagtatccaaccgcgatgcgactcaactggtggcaagc
gatctgggctttgcgcttggaccgcgcctcaatgccgccggtcggctggacgatatgtcc
gtcggtgttgaactgctgttgtgcgatgacattgtgcaggcgcggatgctggcaagcgat
ctggatgcgttgaaccagagtcgccgcgaaattgaagcgggtatgcaggtggaagcgctg
cacctgtgcgatcaactggaacgcagccgtgatacgctgccgctggggttggcgatgtac
catccgcagtggcatcagggagtagtgggcattctggcctcgcgcatcaaggagcgtttt
caccgcccggttatcgcgtttgcgcccgcgggtgatggcattctgaaaggttccgggcgc
tctatcgccgggttgcatctgcgcgatgcgctggaacgccttgatacctgtcaccccggc
ctgatgttgaaatttggcggccacgcgatggcggcggggttgtcgctggcagaagatcgt
tttgatgagtttcgccagcgttttgctgatctggtcggcgagtggctggatgcctcacaa
ctggaaggcgtggtatggtcagatggcgagctggctgcgcctgaactgtcgcttggtacc
gctgaaatgctacgtgaagcgggaccatgggggcaggcatttccagaaccggtcttcgat
ggccgctttcgcctgttgcagcagcggctggtcggcgagcgtcatctcaaagtgatggtg
gaaccgctgggcggcggcccactgctggatggtatcgctttcaatgtagatactttgctg
tggcctgacagcagtgtgcgtgaagtcgaactggcgtacaaactggacgtcaatgaattt
cgcggcaaacgttcggtacaactgctgatagagcacctgtggccgctgtag
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