Dickeya poaceiphila: Dpoa569_0003346
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Entry
Dpoa569_0003346 CDS
T06188
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dic
Dickeya poaceiphila
Pathway
dic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dpoa569_0003346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dic03019
]
Dpoa569_0003346
03009 Ribosome biogenesis [BR:
dic03009
]
Dpoa569_0003346
Enzymes [BR:
dic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dpoa569_0003346
Messenger RNA biogenesis [BR:
dic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dpoa569_0003346
Ribosome biogenesis [BR:
dic03009
]
Prokaryotic type
rRNA helicases
Dpoa569_0003346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDX31336
UniProt:
A0A5B8HSM1
LinkDB
All DBs
Position
complement(3682443..3684317)
Genome browser
AA seq
624 aa
AA seq
DB search
MAEFEISFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIKAELKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLGKLQPQEELDIET
LAAALLKMAQGERPLILPPDPVVERRPRREFRDRDDRFERRGDRNDRGPRGGDDRPARRE
RRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG
ELLSHFTRTRILNKPMNMQLMGDAQPHERRERREGGERGERGARGFGDRAGSGRGRPFSG
ERREGGERRGNRDGQRAPRRFSDA
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtttgaaatctcttttgctagtctggggctgtccgccccgattctgaatgca
ctgtctgagatggggtatgaaaaaccgtctccgattcaggcggagtgtattcctcatctg
ctcaacgggcgcgacgtactgggtatggcgcagactgggagcggcaagaccgcggcattt
tccctgccgctgctgaacaatatcaaggctgaactcaaggcaccgcagttactggtgctg
gcaccgactcgtgagttggcggtgcaggttgcggaagcctgtaacgaattctctaagcat
atgcagggcgttaacgtggtggcgctgtatggcggccagcgttatgacgtgcaactgcgt
gcactgcgtcagggaccgcaaattgtggtcggtactccaggacgcctgttggatcacctg
aaacgcggcacgttggacctgtccaacctgagcggtctggtgttggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagatgtggaaaacatcatggcgcagatcccggctgaa
caccagacggcgctgttctccgccaccatgccggaggcgattcgtcgcattactcgccgc
ttcatgaacgatccacaggaagtgcgcattcagtcgagcgtgactacccgtccggatatc
agccagagttactggacggtatacggtatgcgtaagaatgaagcgctgatccgtttcctg
gaagcggaagactttgatgccgcgatcattttcgtgcgtaccaaaaacgctacgctggaa
gtggccgaagcgctggagcgcagcggttataacagtgctgcgttgaacggcgacatgaat
caggcgttgcgtgagcaaacgctggagcgcctgaaagatggccgtctggatattctgatc
gcgaccgatgttgctgcacgtggtctggatgttgagcgcatcagtctggtagtgaactac
gacattccgatggattccgagtcttacgttcaccgtatcggtcgtactggtcgtgccggt
cgcgccggtcgtgcattgctgtttgtggaaaaccgcgagcgccgtctgctgcgtaatatc
gaacgcaccatgaagctgactattccggaagtggagttgccgaacgccgaactgctgggc
cagcgtcgcctggcgaagtttgccgctaaagtacagcagcaactggaaagcagtgatttg
gacatgtaccgtgcgctgctcggcaaattgcagccgcaggaagagctggatatcgaaaca
ctggccgctgcactgttgaaaatggcacagggtgagcgtccgctgattctgccgccggat
ccggtggttgagcgtcgtccgcgtcgtgaattccgtgatcgtgatgaccgtttcgaacgt
cgaggtgaccgcaatgatcgtggcccacgcggtggtgatgatcgcccggctcgtcgtgag
cgtcgtgacgtgggtgaaatggatctgtatcggatcgaagtgggtcgtgacgatggcgta
gaagtgcgtcatattgtgggtgcgattgctaacgaaggtgatattagcagccgttacatc
ggcaatatcaaactgtttgcctctcactccaccatcgagctgccgaaaggtatgccgggt
gagttgctgtcgcactttacccgcacgcgtattctgaacaaaccgatgaacatgcaactg
atgggtgatgcccagccgcatgaacgtcgtgagcgtcgtgaaggcggtgagcgtggcgaa
cgtggtgcccgtggattcggcgatcgtgctggtagtggtcgtggtcgtccgttcagcggc
gaacgtcgtgaaggtggcgagcgtcgtggtaaccgcgatggtcagcgtgcaccgcgccgt
ttcagcgatgcctga
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