Dickeya poaceiphila: Dpoa569_0003349
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Entry
Dpoa569_0003349 CDS
T06188
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dic
Dickeya poaceiphila
Pathway
dic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dpoa569_0003349 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dic03019
]
Dpoa569_0003349 (pnp)
03016 Transfer RNA biogenesis [BR:
dic03016
]
Dpoa569_0003349 (pnp)
Enzymes [BR:
dic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Dpoa569_0003349 (pnp)
Messenger RNA biogenesis [BR:
dic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dpoa569_0003349 (pnp)
Transfer RNA biogenesis [BR:
dic03016
]
Prokaryotic type
tRNA degradation factors
Dpoa569_0003349 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
S1_RRP5
aRib
KH-I_KHDC4-BBP
Spt6_S1
KH_SLS1_2
DUF4172
Motif
Other DBs
NCBI-ProteinID:
QDX31338
UniProt:
A0A5B8ICW7
LinkDB
All DBs
Position
complement(3685510..3687630)
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AA seq
706 aa
AA seq
DB search
MLNPIIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTEELKTSRLDLVVA
GTEGAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALTAEAGKPKWNWQAPEVNV
ELHNRVQVLSEARLGDAYRITEKQERYAQVDTIKADVVAALLAEDETLDENELRDILGSI
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQSIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKPEA
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSREGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATTQPQETTPVSEEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcattcgtaaattccagtacggtcaacataccgtgacactggaaacc
ggtatgatggcccgccaggccactgccgctgtcatggttagcatggatgacactgcggta
ttcgtaaccgttgtgggtgccaaacacgctaaaccgggccaggatttcttcccgctgact
gttaactatcaagagcgtacctacgctgctggtcgtattcccggtggtttcttccgccgt
gaaggccgtccgagcgaaggcgaaacgctgatttcccgtctgatcgaccgtccgattcgc
ccactgttcccagatggtttcgttaacgaagtccaggttatcgccactgtggtttccgtt
aatccgcaggttaacccggatatcgttgccatgatcggtgcttctgcggcgctgagtctg
tcaggtattccattcaatggcccgattggtgccgctcgcgttggttatatcaacgatcag
tacgtgctgaacccgacgactgaagagctgaaaaccagccgtttggatttggtcgttgca
ggtaccgaaggcgcggtactgatggtggaatccgaagcagacctgctgagcgaagatcag
atgctgggtgcagtggtattcggtcatgatcagcaacaggttgttatcgagaacatcaag
gcactgacggcagaagcgggtaaaccgaagtggaactggcaggcgccggaagtgaacgtc
gaactgcacaaccgtgtgcaggtgctgtctgaagctcgtctgggcgacgcttatcgcatc
actgaaaagcaggaacgctacgcgcaggttgataccatcaaagctgacgtggttgcggct
ctgctggcagaagatgaaacgctggacgaaaacgaactgcgtgacatcctcggcagcatc
gagaagaacgtggtacgtagccgcgtgctgcgtggcgaaccgcgtatcgatggtcgtgaa
aaagacatgatccggggtctggatgtacgtactggcgtgctgccgcgtactcacggttcc
gcgctgttcacccgtggtgaaactcaggcgttggttaccgcgacgctgggtactgagcgt
gatgcacagagcatcgatgagctgactggcgagcgtaccgatcgcttcctgctgcactac
aacttcccgccgtactctgtaggtgaaaccggtatggtcggttcgccgaaacgccgcgaa
attggtcacggtcgtttggctaaacgtggtgtactggcagtgatgccgaaaccggaagcc
ttcccgtacaccgtacgtgttgtgtctgaaattaccgaatccaacggttcttcttccatg
gcatccgtatgtggtgcttctctggcgttgatggatgccggcgtgccgatcaaagccgcc
gttgccggtattgcgatgggcctggtaaaagaaggcgacaacttcgttgttctgtctgac
atcctgggtgacgaagaccacctgggcgatatggacttcaaagtagccggtagccgtgaa
ggcgtgactgcgttgcagatggatatcaaaatcgaaggtatcacccgcgaaatcatgcag
gtagcgctgaatcaggccaagggtgcgcgtttgcacattctgggtgtgatggaacaggct
atcagcacgccgcgtggcgatatctccgaattcgcaccgcgtattcacactatcaagatc
agtaccgacaagatcaaagatgtgatcggtaaaggtggctcggttatccgtgcactgacc
gaagaaaccggtacgactattgagatcgaagacgacggtacggtgaagatcgcctcgacc
gacggcgaaaaagccaaacacgcgattcgtcgtattgaagagatcacggctgaaatcgaa
gtgggccgcatttatcagggtaaagtgacccgtatcgttgattttggggcttttgttgcc
atcggcggcggcaaagaaggtctggttcatatttctcagatcgccgacaagcgtgttgag
aaagtgactgactatctgcagatgggccaggaagtaccggttaaggtactggaagtggac
cgtcagggtcgtgtccgtttgagcataaaagaagcaacgactcaacctcaggaaactact
ccggtttccgaggaagaataa
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