Dickeya poaceiphila: Dpoa569_0003710
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Entry
Dpoa569_0003710 CDS
T06188
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
dic
Dickeya poaceiphila
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dic03019
]
Dpoa569_0003710 (csrD)
Messenger RNA biogenesis [BR:
dic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Dpoa569_0003710 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
DUF202
Motif
Other DBs
NCBI-ProteinID:
QDX31657
UniProt:
A0A5B8IJQ6
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All DBs
Position
complement(4081633..4083579)
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AA seq
648 aa
AA seq
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MGLTARISIVMTMLAALAVVLMLVGSIFSFVCYSQQRMEHQLRAVAASIDQALLVQSPAT
IQFWLPAVMKAAGIVELEIRDGRERIYLVRLPEMLPDGEERALFYHHTSLSLLQHTDVKV
KVTYVDPLFGIPRYLKATLSIVLVILAIALAVFHGVRWLRRQMAGQEQLDRRARRILAGE
RDSVMHGSVHEWPAAASGALDQLLLDLAEAREARSRVDTLIRSFAAQDAQTGLNNRLFFE
NQLATQLEDPEDVGTHGVVMMIRLPDFDTLQETHGYGGVLEEYRNTLINLLSTFVLRYPS
ALLARYYHSDFTVLLPHRTLKEADSIASQLAKAIDILPVTPLIDREDILHIGICAYRSGQ
TTDQVMECVEDATRNAVLQGGNSWCVYDQRVPEKGRGSVRWRTLLEHTLLRGGPRLYQKP
AITRDGELHHREMFSRIYDGTQELLEAEYMPLVRQLGLTSGYDRQLINRVIALTVSWQDS
VLAFPITVDSLLQRPFLRWLRETLIQCPKKQRERLLFELAEADVCQYIGRLRPILKMITG
LGCRLAVTHAGLTLVSTTYIKSLQVEVIKLHPGLVRSLNKRPENQLFVSSLTEACKGTNA
HVFASGVRTHEEWQTLLDKGVCGGQGDLFAASEPVGNTLKKYSPRTYV
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggggttgactgccagaatatcaatagtaatgacgatgctagcggcattagcggtggtg
ctgatgttggtcggcagcattttcagttttgtgtgttatagccagcaacgaatggagcac
caactgagggcggtggcggcaagtattgatcaggcattgctggttcaatcgcccgcgact
atccagttctggctgccggcagtgatgaaggcggctggcattgtagaactggagatccgc
gatggtcgtgaacgaatctatttagttcgtctgccggagatgttgcctgacggtgaagag
cgggcgctgttctaccatcacaccagcctctctttgttgcagcatacagacgtgaaggtg
aaagtaacctatgtcgatccgctattcggtataccgcgttatctcaaagctacgttgtct
attgtgttggtgatactggcgatagcgctagccgtttttcatggcgtgcgctggctacgg
cgtcagatggccggacaggaacagcttgatagacgtgcgcggcgcattctggcgggagag
cgcgactcggtgatgcatggttctgtgcatgaatggccagcagcggccagtggtgcgctg
gaccagttactgcttgatctggccgaggcacgtgaggcgcgtagtcgggtggataccctg
attcgttcctttgcggcgcaggatgcacaaactggcctgaataatcgattattttttgag
aatcagcttgctacgcaactggaagatcctgaagacgttggtacgcatggcgtggtgatg
atgatccgcctgcctgattttgacacgctacaggagacgcacggctatggcggtgtgctt
gaagagtaccgcaataccctgatcaacctgctgtccacgtttgtcctgcgttatccttcc
gcactgctggcacgttattaccacagcgattttacggtgctgttgccgcatcgtaccctg
aaagaggcagacagcatcgccagccaactagcgaaggcgatagacattctgccggttacg
ccgctgattgatcgggaggatattctgcatatcggcatttgtgcctatcgcagcgggcaa
acgactgatcaggtgatggaatgcgtggaggatgctacccgcaatgccgtattgcagggg
ggaaacagctggtgtgtgtatgaccaacgcgtaccggaaaaaggccgtggcagcgtaaga
tggcgtactttactggaacataccctgctgcgtggtgggccgcgtctgtatcagaaaccg
gccattacccgcgacggggagttgcaccatcgggaaatgtttagccgcatttatgatggc
actcaggagttgctggaagcggagtacatgccgttggtgcgtcagcttggcttgacctcc
ggttatgacaggcaactgattaaccgggtgattgctctgaccgtcagttggcaggattcg
gtgctggctttcccgataacggtggattcgctgctgcaacggccattcttgcgctggtta
cgtgaaaccctgattcagtgccccaaaaaacagcgagagcgattattgtttgaacttgct
gaggcagatgtgtgtcaatatatcggtcgtttgcgaccgatactgaagatgattaccggc
ctgggctgtagactggcggtgacacatgccgggctgacgctggtcagcaccacctatatc
aagtcgctgcaggtggaagtcatcaagttgcatcccggattggtgcgtagtttgaataag
cgcccagagaatcaactgtttgtcagtagccttaccgaagcctgcaaggggacgaatgcc
catgtcttcgcttcgggcgtgcgtacgcacgaggagtggcagacgttgctggataaaggg
gtttgcggcggtcagggcgatctgttcgctgcttcagagccggtaggtaacacgctgaaa
aaatattcaccgcgcacgtatgtttga
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