Dickeya poaceiphila: Dpoa569_002740
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Entry
Dpoa569_002740 CDS
T06188
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
dic
Dickeya poaceiphila
Brite
KEGG Orthology (KO) [BR:
dic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dic03400
]
Dpoa569_002740
DNA repair and recombination proteins [BR:
dic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Dpoa569_002740
Archaeal homologous recombinant proteins
Dpoa569_002740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_15
ABC_tran
cobW
AAA_21
TsaE
NTPase_1
nSTAND3
GTP_EFTU
zf-Mss51
AAA_22
RsgA_GTPase
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QDX30828
UniProt:
A0A5B8IB05
LinkDB
All DBs
Position
3037217..3040900
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNSLQGEWKIDFTREPFVNNSLFAITGPTGAGKTTLLDAICLALYHQTPR
LKVSPSQNELMTRHTAECLAEVEFEVKNVAYRAFWSQHRAHNSPEGNLQPPKVEMALCAS
GKILTDKVNEKLAMIADITGLDFDRFTKSMMLSQGQFAAFLNADANQRAELLEELTGTDI
YGQISERVFEKHKEAQNQLETLRAKVATLELLSDEQRQELEQQLEAIRQQEQSLSLHREE
ILAHQRWYETLLQLQQTQKQAQQQQTAQQQLQQQSQPQLDKLQRSEPAEKLRPRYDERAR
AQREKQRLTQQLTSVHQQIRRQQDTLNLLKIQLEKALSARQQHAEQRQQQETLINERILP
LDHRIATLQAQRAQQQQTLDNLLEQQKTLIAGVARLQRQQEQAQQRLQDIETYRQRHSRH
QHLGSHIPLWQTQFPQQVKWQQDLHVLQEKAAAQQIQAEYLDQQRASLAEKHQAQQSACE
RAQQLLNDHLQQDKQLEAEHPLADLRQQLAQRMAERPDRQQLATGVAVLQQLISQRTLLE
AQQLDTQRRVQALEDQQQQQRQDYQRQAEHLADLDKRYELEQHIVSLERERQQLQPGKEC
PLCGSPHHPAVERYQALRPSETQLRLYVLRQEVEALKASVVQTETQLQLQKQHRQQQQNS
LESVQRDFESLRLQCQSVSKRLLVDFDPLQLSALHQWIETCDAQEQSLQAHIASRERNQR
HIQESKDLLTSAQQLLAQTLQQLELNTQQHASLQASREELRLLLEKTENELQRLHDSLSQ
TLDTFGLTMPTFALQEEWLRQRQTEWLRWQENEHEQHQCKPQLAALEAEIIASQQRLEET
EAAIKTGQQQLAETQRTLEQAQQQRWQLLGNQAVNDVLKQLRQVSQTLELESQQAQQQWQ
QGQSLQSRLSGEIGSLEQQNQHADAALQQLQAQFEEELTAAGFSDEAAFRQALMDEAERH
QLIALKERLSQRQQQVDALLQQADSALEQHMTTRPESMPEGINDWDIRQLISSLGDMVKV
EVERQGELRQQLTSDQQRRDKQRQLLEAITRGQQVCDDWGYLNQLIGSQKGDKFRRFAQG
LTLDHLVFLANRQLSRLHGRYLLQRKASDTLELQVADTWQADAIRDTRTLSGGESFLVSL
ALALALSDLVSAKTRIDSLFLDEGFGTLDGETLDTALDVLDNLNASGKTIGVISHVEAMK
DRIQVQIRVRKRNGLGISQLDSTYAVK
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcttagcctgcgtctgaaaaaccttaactcgttgcagggcgaatggaaaatc
gacttcacccgcgagcccttcgtcaacaatagtctgttcgccattaccggtcccaccggt
gcaggtaaaacgacattgctggacgccatctgcctggcgttgtaccaccagacgccacgc
ctgaaggtcagccccagccaaaacgaactgatgacgcgccacaccgccgagtgtctggcc
gaagtcgaattcgaggtgaaaaacgtcgcctaccgcgccttctggagccagcaccgcgcc
cacaacagcccggaaggcaacctgcaaccgcccaaagtagagatggcgttgtgtgccagc
ggcaagattctcactgataaggtgaacgaaaagctggcgatgatcgccgatatcaccggt
ctggattttgatcgtttcaccaaatcgatgatgttgtctcaggggcagtttgccgctttc
ctcaacgccgacgccaatcaacgggccgaattgcttgaagaactgaccggcaccgacatc
tacggtcagatctcagagcgggtattcgagaagcataaagaggcccagaaccaactggaa
accttgcgggcaaaggtcgccacgctggaattgctgagcgatgaacagcgccaggaactg
gagcaacaactggaagccatccgccagcaggagcaatcactgtcgttgcaccgggaagaa
atactggcgcatcagcgttggtacgagacgctgctgcaactccagcagacacagaaacag
gcacagcagcagcaaaccgcgcaacagcaattacagcaacaatcgcaaccgcaactggat
aaattgcaacgtagcgaaccggcggaaaagttgcgcccacgctatgacgagcgcgcacgc
gcgcagcgggaaaagcagcggctaacccagcaattgacgagtgttcaccaacagatcaga
cgccagcaggacacactcaatctactgaaaatacagctggaaaaagcgttgtctgcccgt
cagcagcacgccgaacagcgccagcagcaggaaaccctgattaatgagcgaattctgccg
cttgaccaccgcatcgccaccttgcaggcacagcgcgcccagcagcagcaaacgctggat
aatctgcttgagcaacaaaaaacgctgattgccggcgtggccagattgcagcgccagcaa
gaacaggcacaacagcggttgcaagacatcgaaacctatcgccagcgacatagccgccat
cagcatctgggcagccatattcctttgtggcaaacgcaatttccccagcaggtgaaatgg
cagcaggatttacacgtgttgcaggaaaaagcagcagcgcaacagattcaggcagagtac
cttgaccagcagcgcgcctcactggcagaaaaacatcaggcgcagcagagcgcctgcgaa
cgcgcccaacaactgctgaacgatcatctgcaacaggataagcaactggaagcggaacac
ccgctggcagacctgcgccagcaactggcgcagcgcatggcggaacgacccgatcgtcag
caactggctaccggcgtcgccgtgctgcaacagctgatcagtcagcgcaccttgctggaa
gcacaacagcttgatacccaacggcgtgttcaggcgttggaagatcaacaacagcaacaa
cgtcaggactatcagcgccaggctgagcatctggcggatctcgacaagcgttatgaactg
gaacagcacattgtcagcctggaacgtgaacgccagcaattacagccgggcaaagagtgt
ccgctatgcgggtcgcctcatcacccggcggtagagcgctatcaggcgttgcggccatcg
gaaactcaacttcggttgtacgtattgcgtcaggaagtggaggcgctaaaagccagcgtc
gtgcagaccgaaacccagttgcagttgcaaaaacaacaccgccaacagcagcaaaattcg
cttgagagtgtccagcgcgatttcgagtcgctgcggctacagtgccagtctgtcagtaaa
cgcttacttgttgacttcgatccgttacaactgtcagcactgcaccagtggattgaaact
tgtgacgcgcaggaacagtcgctgcaggcacacatcgccagccgtgagcgcaatcagcgc
catattcaggaaagtaaggatttactgacttcagcgcagcagctgctggcgcaaacctta
caacaactggaactgaacacccagcagcacgcctctttgcaggcatcacgggaagaactg
cggttattactggaaaaaaccgaaaacgaattgcagcgtctgcacgacagtctcagccag
acgctggacaccttcgggctaaccatgccgacgttcgccctgcaggaagagtggctacgc
caacgtcaaacggaatggctgcgctggcaggaaaacgagcacgaacagcatcagtgcaag
ccgcaactcgccgcactggaagctgaaatcatcgccagtcagcaacggctggaagaaacc
gaggcagccatcaaaaccggtcagcaacagttagcagaaacccaacgcacgctggaacaa
gcccagcaacaacgctggcaattgctcggcaatcaggccgtcaacgatgtactgaagcaa
ctgcggcaagtcagccagactctggagctggagagccagcaggcgcaacagcaatggcaa
caagggcaatcgctgcaaagtcgccttagcggtgaaatcggcagtctggaacagcaaaac
caacatgccgacgccgcgttgcaacaacttcaggctcagtttgaggaagaactcaccgcc
gccggattcagtgatgaagcggcttttcgccaggcgttgatggacgaagccgaacgccat
caactcatcgcgctaaaagagcgactcagccaacgccagcaacaggtagatgccttgtta
caacaggcggatagcgcgctggagcaacatatgacgactcgcccggagtcgatgccggaa
ggcatcaatgactgggatattcgtcagttgatctccagcctcggagacatggtaaaagtc
gaagtcgaacgccagggtgagctgcgtcaacagctgaccagcgatcagcaacgccgcgat
aagcagcgccagttactggaagcgatcacacgcggtcagcaagtctgcgatgactggggc
tacctcaatcagctaatcggatcgcagaaaggcgataaattccgccgcttcgctcaggga
ttgacgctggatcatctggtatttctggccaaccgtcagttatcgcgcctgcatgggcgc
tacctgctgcaacgcaaagcgtccgacacgctggagctgcaagtggccgatacctggcag
gctgatgctatccgcgatacccggacactgtcgggcggcgaaagttttctggtcagcctg
gcgctggcactggcattgtccgatttggttagcgctaaaacccgcatcgactccctgttc
cttgacgaaggtttcggcacactggacggcgagacgctggataccgcactggacgtgctg
gacaatctcaacgcctccggtaaaaccatcggcgtaataagccatgtggaagcgatgaaa
gaccgcatacaggtgcagatccgggttagaaaacgcaacggtcttggcatcagccagctc
gacagcacttacgctgtgaaataa
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