Dietzia sp. DQ12-45-1b: GJR88_03107
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Entry
GJR88_03107 CDS
T11395
Name
(GenBank) ATP-dependent DEAD-box RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
did Dietzia sp. DQ12-45-1b
Pathway
did03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
did00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJR88_03107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
did03019
]
GJR88_03107
03009 Ribosome biogenesis [BR:
did03009
]
GJR88_03107
Enzymes [BR:
did01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GJR88_03107
Messenger RNA biogenesis [BR:
did03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJR88_03107
Ribosome biogenesis [BR:
did03009
]
Prokaryotic type
rRNA helicases
GJR88_03107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
HEM4
PT
Motif
Other DBs
NCBI-ProteinID:
QGW25038
LinkDB
All DBs
Position
complement(2131875..2133908)
Genome browser
AA seq
677 aa
AA seq
DB search
MSNDNEDRTATAGDEVETAASAPDTTEPAAEPVAEPAAEPAAEPAAEPVAEPAGEPASSG
GASGKRAPAAETAAENAGDDAVTFADMGLDPAVAKAVKDVGYEVPSGIQAAIIPLVMEGR
DVVGLAQTGTGKTAAFALPILSLIDPSVKSPQALVLAPTRELALQVAEACITYSANMPQV
SVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAM
GFQEDVERILSDTPQSTQVALFSATMPAAIRRISQKYLTDAAEVKVASKTATAPTIQQRY
VLVNHRDKLDALTRIFEVEDFDAMILFVRTKSATEELAERLRARGFSAAPINGDIPQNLR
ERTIEALKDGRTDILVATDVAARGLDVPRISHVVNYDIPHDTESYVHRIGRTGRAGRSGQ
ALLFVTPRERRLLSQIERATRQPLTEIQLPSVDDVNEMRMAKFAQSITESLNDPNLAMFR
RLVEEYAAEHSVSMADIAAALATQSRNSADFLMREPERPARRDRQDDRRDPRRDDRRERP
GRGFSDGPRPSRSGKDMAQYRIAVGKRNNVKPGSIMGALANEAGLSGGDIGRISIRFDHS
IVELPAGLSRDQIDSMRGIRVSGTEIDIRPDSGPPAGRPSATRDDRGGRPRGGDRGGRDD
RRGGGFRGRSGGGSDRY
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgacaacgaggaccgtaccgccactgccggcgacgaggtcgagaccgccgcc
agcgccccagacaccaccgagcccgcagcagagcccgtggccgagcccgccgcagagccc
gcggccgagcccgccgccgagcccgtggccgagcccgccggcgagcccgcgtcgagcgga
ggcgcctcggggaagcgcgccccggccgcggagaccgccgcggagaacgcgggcgacgac
gccgtcacgttcgccgacatggggctcgacccggccgtcgccaaggcggtcaaggacgtc
gggtacgaggtcccctcgggcatccaggcggccatcatcccgctggtgatggagggccgc
gacgtcgtggggttggcgcagaccggaaccggcaagaccgcggccttcgcgctgccgatc
ctctccctcatcgacccgtcggtcaagagcccgcaggcgctcgtgctggcccccacccgc
gagctcgcgctgcaggtcgccgaggcgtgcatcacctattccgccaacatgcctcaggtc
agcgtcctgccgatctacggtgggcaggcctacgggatccagctctccggtctgcggcgg
ggggcacagatcatcgtggggacgcccggtcgggtgatcgatcacctgaagaagggcacg
ctcgacctgtcgggcctgcgtcatctcgtcctcgacgaggccgacgagatgctcgcgatg
ggcttccaggaggatgtcgaacggatcctctcggacaccccgcagtccacccaggtcgcg
ctgttctcggccacgatgccggctgccatccgccggatctcccagaagtacctcaccgac
gcggccgaggtgaaggtcgcctcgaagacggccacggcgccgaccatccagcagcgttat
gtgctggtgaaccaccgcgacaaactcgacgcgctgacgcggatcttcgaggtcgaggac
ttcgacgcgatgatcctgttcgtccgcaccaaatcggccacggaggagctggcggaacgt
ctgcgggcccgtgggttctccgcggcaccgatcaacggcgacatcccccagaaccttcgc
gagcggaccatcgaggcgctcaaggacggtcggaccgacatcctggtggccacggacgtc
gcagcgcgtggtctggacgtgccccggatcagccacgtggtcaactacgacatcccgcat
gacacggagtcgtacgtccaccggatcggccgcacgggccgcgcgggtcgcagtggccag
gcgctgctgttcgtcaccccgcgggaacgccggttgctctcgcagatcgagcgggccacc
aggcagccgctgacggagatccagctgccgagcgtggacgacgtcaacgagatgcgcatg
gccaagttcgcccagtcgatcacggagagcctgaacgacccgaacctggcgatgttccgc
cgcctcgtggaggagtacgccgccgaacactcggtctcgatggccgacatcgccgccgcc
ctcgccacccagtccaggaactccgccgacttcctcatgcgggagcccgagcggccggcc
cggcgtgatcggcaggacgatcgccgcgacccccggcgggacgaccggcgcgagcgcccc
gggcgcggcttctcggacgggccccgcccctcgcggtccggcaaggacatggcgcagtac
cggatcgccgtgggcaagcggaacaacgtcaagcccggatcgatcatgggcgcgctggcc
aacgaagccggactcagcgggggcgatatcgggcgcatctcgatccgtttcgaccactcg
atcgtcgaactccccgcgggtctgtcccgtgaccagatcgactcgatgcgcggaatccgg
gtctccggtacggagatcgacatccgtccggactccggcccgcccgccggtcgcccgtcc
gccacgagggacgaccgcgggggccgcccccgcggtggggatcgcggtggccgcgacgac
cgccgcggaggcgggttccgtggccgctcgggcggcggatcggacaggtactga
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