Dietzia sp. DQ12-45-1b: GJR88_03860
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Entry
GJR88_03860 CDS
T11395
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
did Dietzia sp. DQ12-45-1b
Pathway
did03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
did00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GJR88_03860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
did03021
]
GJR88_03860
03400 DNA repair and recombination proteins [BR:
did03400
]
GJR88_03860
Enzymes [BR:
did01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GJR88_03860
Transcription machinery [BR:
did03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GJR88_03860
DNA repair and recombination proteins [BR:
did03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GJR88_03860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QGW25535
LinkDB
All DBs
Position
complement(2646150..2650109)
Genome browser
AA seq
1319 aa
AA seq
DB search
MQDVNYFDELVISLATAENIRNWSYGEVKKPETINYRTLKPEKEGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLDKIIYFAAYVITGVDSDLRHNELSTLEAQILEERKIIEDERDSDIEARAKKLEAD
LAELEAEGAKADQRRKVKDGGEKEMKKIRESAQRELDRLEEIWTTFTKLEVNQIIVDESI
YRELEDRFGEYFEGGMGAEAIQSLLENFDLESEAESLRDIIRNGKGQKKIRALKRLKVVS
AFLRSGNNPAAMVLGAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLQLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
DQVWDVLEEVIAEHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGRPLAMPRLDMVTGLYYLTRLDEGATGAYV
PATQDAPATGVYSTPAEAIMAVDLGVLDIHAPIRVRMTHQRPPAEIEAELFPEGWSQGQE
WMAETTLGRVMFNELLPADYPFVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDTGF
YWATRSGVTIAMSDVLVPPAKKEILASYDAKAARLESQFGLGKITDEERKSDLVKLWQEA
TDEIGQAMEANYPDSNPIPTIVKSGAAGNMTQIRSLAGMKGLVTRPNGEFIPQPIKSSFR
EGLTVLEYFMNTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSKGIETVI
ARREVDAHGVETGALSRDEHVETSTFARTLAEDAVDASGTVIVAAGTDLGDPTIEALIAA
GVEKVKVRSVLTCTTGTGVCATCYGRSMATGLLVDIGEAVGIVAAQSIGEPGTQLTMRTF
HQGGVGDDITGGLPRVQELFEARVPKGKAPIAEEAGRIRLEEEERFYTITIVPDNGADEI
VYEKLSKRQGLAHITLDDGSSRPIVDGDHLDRGQPLLEGPADPHEVLAILGPNGVQKFLV
DEVQKVYRAQGVSIHDKHLEVIVRQMMRRVAINESNSTEFLPGALVERAELTAENRRVLT
EGGSPASARPVLMGITKASLATDSWLSAASFQETTRVLTDAAINRRSDRLVGLKENVIIG
KLIPAGTGINRYRNSTVEPTEEARAAAYSIPDYGDGFYGPEDGFGDATGASVRLDDLGY
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggacgtcaactacttcgacgagctggtcatcagcctggcgacggcggagaacatc
cgcaactggtcctacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
ccggagaaggagggcctgttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccc
gtcacccacatctggtacttcaagggcgtcccgtcgcggctgggctacctcctggacctc
gcgcccaaggacctcgacaagatcatctacttcgcggcctacgtcatcaccggcgtggac
tccgacctgcgccacaacgagctcagcaccctcgaggcgcagatcctcgaagagcgcaag
atcatcgaggacgagcgggactccgacatcgaggcacgcgccaagaagctcgaggccgac
ctggccgaactggaggccgagggtgccaaggccgaccagcgccgcaaggtcaaggacggc
ggcgagaaggagatgaagaagatccgcgagtcggcccagcgtgagctggaccgtctcgag
gagatctggaccaccttcaccaagctggaggtcaaccagatcatcgtggacgagagcatc
taccgcgagctcgaggaccgcttcggcgagtacttcgagggcgggatgggtgccgaggct
atccagtcgctgctggagaacttcgacctcgagagcgaggccgagagcctgcgcgacatc
atccgcaacggcaagggccagaagaagatccgcgccctcaagcgtctcaaggtcgtctcc
gcgttcctgcgctcgggcaacaacccggccgcgatggtgctcggggccgtcccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggcggccggttcgccacctcggacctc
aacgacctctaccgccgcgtgatcaaccgcaacaaccgtctcaagcggctgatggatctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgcg
ctgttcgacaacggtcgtcgtgggcggcccgtcacggggccgggcaaccgaccgctcaag
tcgctctcggacctcctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggtcgttccgtcatcgtcgtgggtccgcagctccagttgcaccag
tgcggtctgcccaagctcatggctctcgagctgttcaagccgttcgtcatgaagcggctg
gtggacctcaaccacgcccagaacatcaagtccgccaagcggatggtcgagcgtcagcgc
gaccaggtgtgggatgtgctcgaagaggtcatcgccgagcacccggtgatgctcaaccgc
gcgcccacgctgcaccgcctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcgcaggccgaggcccgcatcctcatgctc
gcctcgaacaacatcctgtcgccggcgtcgggccgaccgctcgccatgccgcgtctggac
atggtgacgggtctgtactacctgacccggctcgacgagggagccacgggcgcctatgtc
ccggccacgcaggacgccccggcgaccggcgtgtactcgaccccggcggaggccatcatg
gccgtcgacctgggggtgctggacatccacgcgccgatccgggtgcggatgacgcaccag
cggccccccgccgagatcgaggccgagctgttccccgaggggtggagccagggccaggag
tggatggccgagaccacgctgggtcgcgtgatgttcaacgagctgctcccggcggactac
ccgttcgtcaacgagcagatgccgaagaagcgacaggccgtgatcatcaacgacctcgcc
gagcggtacccgatgatcgtcgtcgcgcagacggtggacaagctcaaggacaccggtttc
tactgggccacccgctcgggcgtcaccatcgcgatgtccgacgtcctggtcccgccggcc
aagaaggagatcctcgcctcgtacgacgccaaggcggcccgcctcgagtcgcagttcggc
ctgggcaagatcaccgacgaggagcgcaagagcgacctggtcaagctctggcaggaggcc
accgacgagatcggtcaggccatggaggccaactacccggactccaaccccatcccgacg
atcgtcaagtcgggcgcggcgggcaacatgacccagatccgctcgctcgcgggcatgaag
ggcctggtgacgcgtccgaacggcgagttcatcccgcagcccatcaagtcctcgttccgc
gagggtctgaccgtgctcgagtacttcatgaacacgcacggtgcgcgcaagggtctggcc
gacacggcgctccgtacggccgactcgggctacctcacgcggcgtctcgtcgatgtctcc
caggacgtcatcgtccgcgagacggactgtgggacgagcaagggcatcgagaccgtcatc
gcccgacgtgaggtggacgcgcacggggtcgagaccggtgctctctcgcgggacgagcac
gtcgagacctcgacgttcgcccgcaccctcgcggaggacgcggtcgacgcctccgggacg
gtcatcgtggccgccggcaccgacctcggcgacccgaccatcgaggcgctcatcgccgcc
ggagtggagaaggtcaaggtccgctcggtcctcacctgcaccacgggtacgggagtctgc
gccacctgctacggccggtccatggcgaccggtctgctggtcgacatcggcgaggccgtc
ggcatcgtcgccgcccagtccatcggtgagccgggcacccagctgaccatgcgcacgttc
caccagggtggcgtcggtgacgacatcaccggcggtctgccgcgtgtgcaggagctcttc
gaggcccgggtacccaagggcaaggccccgatcgccgaggaggcgggccgcatccgcctc
gaggaggaggagcgcttctacaccatcacgatcgtgccggacaacggcgcggacgagatc
gtgtacgagaagctgtccaagcgtcagggactcgcgcacatcaccctcgatgacgggtcc
tcccgcccgatcgtcgacggcgaccacctcgaccgcgggcagccgctgctcgaggggccg
gccgacccgcacgaggttctggccatcctgggcccgaacggtgtccagaagttcctcgtc
gacgaggtgcagaaggtctaccgcgcgcagggcgtgtcgatccacgacaagcacctcgag
gtgatcgtccgccagatgatgcgtcgcgtcgccatcaacgagtccaacagcaccgagttc
ctgcccggtgccctggtcgagcgcgccgagctcaccgcggagaaccgtcgcgtcctcacc
gagggcggctcgccggcctcggcgcgaccggtcctcatgggtatcaccaaggcctcgctc
gccacggactcgtggttgtcggcggcctccttccaggagaccacccgcgtgctcacggac
gccgccatcaaccggcgttcggacaggctcgtgggcctcaaggagaacgtcatcatcggt
aagctcatcccggcgggtaccggcatcaaccggtaccggaactcgacggtcgagcccacc
gaggaggcccgcgcggcggcctactccatcccggattacggggatgggttctacggtccc
gaggacggattcggcgacgccaccggcgcgtcggtccgcctggacgacctggggtactga
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