Diaphorobacter sp. HDW4A: G7047_01100
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Entry
G7047_01100 CDS
T06499
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dih
Diaphorobacter sp. HDW4A
Pathway
dih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7047_01100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dih03019
]
G7047_01100
03009 Ribosome biogenesis [BR:
dih03009
]
G7047_01100
Enzymes [BR:
dih01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G7047_01100
Messenger RNA biogenesis [BR:
dih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G7047_01100
Ribosome biogenesis [BR:
dih03009
]
Prokaryotic type
rRNA processing factors
G7047_01100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QIL78670
UniProt:
A0A6G8CJ07
LinkDB
All DBs
Position
complement(246771..249953)
Genome browser
AA seq
1060 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQAKIQDAIREGQELLVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLDYPKGMSIIARTAGIGRTAPELQ
WDLNYLLKLWTAIDGAAKSGRGAFLIYQESSLVIRAIRDYFNGDIGDILIDTDDIFDQAH
QFMSHVMPEHASRVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAVVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGSISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVNVVMIPNKSLETPH
YKLERLKHDDPRLEDLQASYQLAEETEDQTKVTRRSQEPTNKQTPVIKGVLPDAPAPQVE
PRPDAAARAAARATGQQPQRTGTAAPATPPAPTPAHPAPARPQEMGFIAWLKSLFGFGPA
AAPVAAPAPVAAPAAETREPRREGRGNDRRRGGNRDGSRDGNRDGNREGGRDNQRDANRT
EGANGESRGEGRNGRRNERNDRSANGEPRQPREGGEARNNDRRNERNDRGERAEGENRRE
PRNGRDRNNEQRNANPAFDASAPAGMPSDDTSAVTGDRPRRERGERGDRGERGQRGERRE
RGERAPRTIDANAAAPVAENLPLMPMPDIDLSLNNPVDANNDGANVEGASTAPEGERRER
RSRDRYGRDRRGRNNGNAETGTESGMDTQTPAAEVQADVIVAASSTENVVAGDEPARRSY
FSQSTAVAVAAVEPVVAAPAPAPAPAPVAEAAPAPTIVVSPSAEAIVVPAAQPVVVAKIA
EAVTEVAQDVGMPRVRNYELPMQSLSELANASGLQWVNSDANKIAAVQAAIASEPKPVHV
PRERPPVVVIDEGPLVLVETRRDLSELRLPFDQEQQQQQQ
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaatgccacgcagcccgaagaacgccgcttggccatcgtcgac
ggccagaagctgctggactacgagatcgagatcgagggacgcgaacaacgcaagggcaac
atctacaaggcggtcgtgacccgcgtcgagccatcgctcgaagcctgctttgtggactac
ggcgaagaccgccacggcttcctgcccttcaaggaaatctccaagcagtatttcgccgaa
ggcgtctcgcccagtcaggccaagatccaggacgcgatccgcgaaggtcaggaactgctg
gttcaggtcgaaaaagaagagcgcggcaacaagggcgcagccctgaccaccttcatctca
ctggccggccgctatgtcgtgctgatgcccaacaacccacgcggcggtggcgtttcgcgc
cgtatcgagggtgaggaccgcgccgagctcaaagaagcgatggaccagctcgactacccc
aagggcatgtcgatcattgcgcgcaccgccggcatcggccgcaccgcgcccgagctgcag
tgggacctgaactacctgctcaagctgtggaccgccatcgacggcgcagccaagtcgggc
cgtggagccttcctgatctatcaggaatcgagcctcgtgatccgcgcgatccgcgactat
ttcaacggcgacatcggcgacatcctgatcgacaccgacgacatcttcgatcaagcgcat
cagttcatgtcgcacgtgatgcccgagcacgcatcgcgcgtgaagcgctaccgcgacgac
gcgccgctgttcagccgctttcagatcgagcaccagatcgagtccgcctactcgcgcacc
gtgaccctgccttcgggcggcgccgtggtgatcgaccacaccgaagcactggtttcggtg
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaagaaaccgccacccgcacc
aacctggaagccgctgacgaagtggcccgccagatgcgtctgcgcgatttgggcggtctg
atcgtcatcgatttcatcgacatggaagagtcgaagaaccgccgcgaagtggaaaaccgc
ctgcgcgacgccctgcgccaggaccgcgcacgcgtgcagttcggctcgatcagcaagttc
ggcctgatggaaatgagccgtcagcgcctgaagcccgctttgtccgaaggtgcgcacatc
aactgcccacgctgcggcggctccggccatatccgcgacacggaaagttcggctctgcag
atcctgcgcatcatccaggaagagtccatgaaggacaacacggccgccgtgcactgccag
gtgccggtggaagtggcttcattcctgttgaacgaaaagcgcaccgaaattgccaagatc
gagctcaagcagcgcgtgaacgtggtgatgattccaaacaagtcgctcgaaacgccgcac
tacaagctcgagcgcttgaagcacgacgatccgcgcctggaagacctgcaggccagctac
cagctcgccgaggaaaccgaagaccagaccaaggtgacccgtcgctcgcaggagccgacc
aacaagcagacccctgtcatcaaaggtgtactgcctgatgcaccggcaccgcaggtcgag
ccacgtcccgatgcagccgcccgtgcagccgcacgcgccaccggccagcagccacagcgc
accggcacagccgctccagcgacgcctccagcgccaacgcccgcacatccagcgccagca
cgtccacaggaaatgggcttcatcgcctggctcaagagcctgttcggctttggcccggct
gccgcacctgttgccgcgcccgcaccagtggctgcaccagcagccgaaacccgcgaaccg
cgccgcgaaggccgtggaaatgatcgtcgccgtggcggcaatcgcgatggaagccgcgat
ggtaatcgtgacggtaaccgtgaaggcggccgtgacaatcagcgcgacgccaaccgtacc
gaaggtgcgaatggtgaatcccgtggtgagggccgcaacggtcgccgcaacgagcgcaat
gaccgcagcgccaatggcgagccgcgccagccacgtgaaggcggcgaagctcgcaacaat
gaccgccgcaacgagcgcaatgaccgcggtgagcgtgcagaaggtgaaaaccgccgcgag
ccccgcaacggccgtgaccgcaacaacgagcagcgcaatgccaatccggcgtttgacgcg
tcggcacccgcaggcatgccatcggatgacacgtccgcagtgaccggagatcgtccacgt
cgtgaacgtggcgaacgcggagaccgtggtgaacgcggccaacgtggcgagcgccgtgag
cgtggtgagcgcgctccgcgcaccatcgacgcgaacgccgcagcacccgtggcggaaaac
ctgccactgatgccgatgcccgacatcgacctgtcgctgaacaatccggtcgatgcgaac
aacgacggtgccaatgtcgaaggtgcatcgacagcgcccgaaggcgaacgccgcgagcgc
cgctcgcgtgatcgctacggccgtgaccgtcgtggtcgcaacaacggcaatgcggaaacc
ggtaccgagtccggcatggacacgcaaacccctgctgccgaagtgcaggccgatgtgatc
gtcgccgcctcgtccacggaaaacgtggtcgcgggcgacgagccagcgcgccgcagctac
ttctcgcagagcaccgccgtggccgtcgccgctgtggagcctgtagtggctgctccggca
ccagcgcccgctccggcgccggtagcggaagccgcgcctgcgccgaccatcgtggtctcg
ccctccgcagaagccattgtcgttccggcagcgcagccagtggtggtcgccaaaatcgct
gaggcagtgactgaagtggctcaggacgtcggcatgccgcgcgttcgcaactacgaactg
cccatgcagtcgctgagtgagctggcaaacgcatcgggtctgcagtgggtgaactccgac
gccaacaagatcgccgcagtgcaagccgcgattgcctccgaacccaagccggtgcatgtg
ccacgcgaacggcctccggtggtagtgatcgacgaaggcccgctggtgctggtcgaaacc
cgccgcgatctgagcgaactgcgcctgccgttcgatcaggaacaacagcagcaacagcag
taa
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