Diaphorobacter sp. HDW4A: G7047_03730
Help
Entry
G7047_03730 CDS
T06499
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dih
Diaphorobacter sp. HDW4A
Pathway
dih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G7047_03730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dih03400
]
G7047_03730 (mfd)
Enzymes [BR:
dih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G7047_03730 (mfd)
DNA repair and recombination proteins [BR:
dih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G7047_03730 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QIL79121
UniProt:
A0A6G8CJT2
LinkDB
All DBs
Position
complement(831017..834499)
Genome browser
AA seq
1160 aa
AA seq
DB search
MDLPKLSPGKRFAMPRPAGSADALLLARLAEREKSHKRVVTIVTADATDARRLIDEMEFF
APELRCAMFPDWETLPYDTFSPHQDLISERLATLWRISQGEADVVLVPATTALYRVAPPS
FLAGYTFHFKAKQKLDEAKLRAQLTLAGYSHVSQVVSHGEYAVRGGLIDLFPMGSTVPYR
VDLFDNEIDTIRTFDPDTQRSLYPVPEVRLLPGREFPMDDDARAKFRSRWRELLEGDPTK
SRIYKDMGNGVATAGIEYYLPLFFDDTATMFDYLGADTTVVLHGDLEAAFLRFWQDTKER
FRLVQGDPERPVLPPETLFLSADQFYARAKDHAQLAIRPNVEDVPDNAHFQKLGDLSVIR
GAEDPLAKLQAHILSGQHRVLLLAESDGRRESLLDFLRASHLNPPAFDSLDEFQHTQDEK
IGIATSTLATGFSWIEGGIDFVTETELFSATGTARRRRKQEQVSDVDALIKDLSELKVGD
PVVHSAHGIGRYLGLINMDIGQKNPDGTPAMQEFLHLEYADKAALYVPVSQLQLISRYTG
VSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAARQGHAFRFNVQDYEQFS
NDFGFDETADQKAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAAMGGMQVAF
LAPTTLLAEQHFQTLIDRFSKWPIKVAEVSRFRSGKEITAAVKGIAEGTVDIVVGTHKLL
SESTKFKNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTMGMALEGLRDLS
VIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIQNRKQKLEEILP
EARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPTANTIIMSRADKFGLA
QLHQLRGRVGRSHHQAYAYLMVPDIDGLTKQAAQRLEAIQQMEELGSGFYLAMHDLEIRG
AGEVLGENQSGNMMEIGFQLYNEMLSEAVAALKAGKEPDLLSPLSVTTDINLHSPALLPD
DYCGDVHLRLSFYKKLATAKTTQQIDILLEEIVDRFGKLPVQTQTLIDVHRLRVMSQPYG
VQKVDAAPGVIHITFKPQPPIDPMNIIQLVQKNKHIKLAGNDKLRIERELPDPKDRAHLV
RDILRSLGQPLTKAPEAAKH
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcccaaactctcgcccggaaaacgttttgccatgccgcgccccgccggttcg
gccgatgcgctgctgctcgcgcgcctggccgagcgggagaaatcgcacaagcgcgtggtg
accatcgttaccgccgatgcgacagacgcacgccgcctgatcgacgagatggagttcttc
gcgcccgagctgcgctgcgcgatgtttcccgactgggagaccctgccctacgacaccttc
tcgccgcatcaggacttgatcagcgagcgcctcgcgacactgtggcgtatctcgcagggc
gaggccgatgtggtgctggtgcccgctacgaccgcgctctaccgcgtcgcaccgccctcg
tttctcgcgggctacaccttccacttcaaggccaagcagaagctcgatgaggccaagctg
cgcgcgcagctcacgctcgcgggctattcccacgtctcgcaggtggtgagccatggcgaa
tacgcggtgcgcggcgggctgatcgacctgttcccgatgggctcgaccgtgccgtaccgc
gtcgacctgttcgacaacgagatcgacaccatccgcaccttcgacccggacacgcagcgc
agcctctaccccgtgcccgaggtgcgcctgctgcccgggcgcgagtttccgatggacgac
gatgcgcgcgccaagttccgcagccgctggcgcgaactgctcgagggtgatcccaccaag
agccgtatctacaaggacatgggcaacggcgtggcgacggcgggcatcgagtactacctg
ccgctgttcttcgacgacacggcgacgatgttcgactacctcggcgccgacaccactgtc
gtgctgcatggtgatctggaagccgcgttcctgcgcttctggcaggacaccaaggagcgc
tttcgcctcgttcagggcgaccccgagcgcccggtgctgccgcccgagacgctgttcctg
agcgccgaccagttctacgcgcgcgccaaggaccatgcacaactcgcgatccgcccgaac
gtcgaggacgtgccggacaacgcgcacttccagaaacttggcgacctctcggtgatccgc
ggcgcggaagacccgctcgccaaactgcaggcgcacatcctgtcaggccagcaccgcgtg
ctgctgctcgccgaaagcgacggtcgccgcgaaagcctgctcgattttctgcgtgcctcg
cacctgaatccgcccgcgttcgattcgcttgatgagttccagcacacgcaagacgaaaag
atcggcatcgccacatcgacgctcgccaccggcttcagctggatcgagggcggcatcgac
ttcgtcaccgagaccgagctgttctccgccaccggcaccgcacgccgccgccgcaagcag
gagcaggtcagtgacgtcgatgcgctgatcaaggacctgtcagagctgaaggtcggcgac
ccggtggtgcacagcgcgcacggcatcggacgttacctcggcctgatcaacatggacatc
ggccagaagaaccccgacggcacgcccgcgatgcaggagttcctgcacctcgaatacgcc
gacaaggccgcgctctatgtgccggtgagccagctgcagctcatcagccgctacaccggc
gtgtcggccgacgaggcgccgctgcacaagctcggcagcggccagtgggaaaaggccaaa
cgcaaggccgccgagcaggtgcgcgactccgccgccgagctgctcaacatctacgcgcgc
cgcgccgcccgccaaggccatgcgttccgcttcaacgtgcaggactacgagcagttctcc
aacgatttcggctttgatgaaaccgcagaccagaaggccgcaatccacgccgtcattcag
gacatgatcagcccgcaaccgatggaccggctggtctgcggcgacgtgggcttcggcaag
accgaggtcgcgctgcgtgccgctttcgttgcggccatgggcggcatgcaggtggcgttt
ctcgcgccgaccacgctgctggccgagcagcatttccagacgctcatcgaccgcttctcg
aagtggccgatcaaggtcgccgaggtctcgcgcttccgctcgggcaaggagatcaccgca
gcggtcaagggcatcgccgagggcacggtggacatcgtcgtcggcacgcacaagctgctc
tccgaatcgaccaagttcaagaatctgggcctgctcatcatcgatgaggaacaccgtttc
ggcgtgcgccacaaggagcagatgaaggccctgcgtgccgaggtcgacgtgctcacgctc
actgccacgccgattccgcgcaccatgggcatggcgcttgaaggcctgcgcgatctgtcg
gtcatcgccactgcaccgcagcgtcgtctggccatcaagacctttgtgcgcaacgagggc
acgggcgtgatccgcgaggccgtgctgcgcgagttgaagcgcggcggccagtgctacttt
ctgcacaacgaggtcgagaccatccagaaccgcaagcagaagcttgaagaaatcttgccc
gaggcgcgcatcgctgtcgcccacggccagatgcccgagcgcgagctggagaaggtgatg
cgcgatttcgtcgcgcagcgctacaacattctgctgtgctcgaccatcatcgagaccggc
atcgacgtgcccaccgccaacaccatcatcatgagccgcgccgacaagttcggactggcc
caattgcaccagttgcgcggacgcgtgggccgctcgcaccaccaagcctatgcctacctg
atggtgcccgacatcgacggcctcaccaagcaggcggcccagcggctcgaggccattcag
cagatggaggaactcggctcgggcttctacctcgcgatgcacgacctcgagattcgcggc
gcgggcgaagtgctcggcgagaaccagagtggcaacatgatggagatcggctttcagctc
tacaacgagatgctgtccgaggccgtggccgcgctcaaggcgggcaaggaacccgacctg
ctctcgccgctgtccgtcaccactgacatcaacctccattcgcccgccctgctgcccgac
gactactgcggcgacgtgcacctgcgcctgtcgttctacaagaagctcgcgaccgccaag
acgacgcagcagatcgacatcctgctcgaagaaatcgtcgaccgcttcggcaagctgccc
gtccagacgcagacgctgatcgacgtgcaccgcctgcgcgtgatgagccagccgtatggc
gtgcagaaggtcgacgccgcaccgggcgtcatccatatcaccttcaagccccagccgccg
atcgatccgatgaacatcatccagttggtgcagaagaacaagcacatcaagctcgccggc
aacgacaagctgcgcatcgaacgcgaactgcccgaccccaaggaccgggcgcatctggtg
cgggacattctgcgcagtctcgggcagccgctcaccaaggctcccgaggccgcgaaacat
taa
DBGET
integrated database retrieval system
