Diaphorobacter sp. JS3050: HND92_03125
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Entry
HND92_03125 CDS
T10221
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
dij Diaphorobacter sp. JS3050
Pathway
dij00521
Streptomycin biosynthesis
dij00523
Polyketide sugar unit biosynthesis
dij00525
Acarbose and validamycin biosynthesis
dij00541
Biosynthesis of various nucleotide sugars
dij01055
Biosynthesis of vancomycin group antibiotics
dij01100
Metabolic pathways
dij01110
Biosynthesis of secondary metabolites
dij01250
Biosynthesis of nucleotide sugars
Module
dij_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
dij00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
HND92_03125 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
HND92_03125 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
HND92_03125 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
HND92_03125 (rfbB)
00525 Acarbose and validamycin biosynthesis
HND92_03125 (rfbB)
Enzymes [BR:
dij01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
HND92_03125 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
Motif
Other DBs
NCBI-ProteinID:
QJY32072
UniProt:
A0A6M6I6Z2
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All DBs
Position
649627..650688
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AA seq
353 aa
AA seq
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MILVTGGAGFIGANFVLDWLAVGDEPVVNLDKLTYAGNLHNLDSLQGDARHVFVQGDIGD
RTLLDRLLAEHQPRAVINFAAESHVDRSIHGPEDFIQTNVVGTFRLLEAVRHYWQALPAT
QKEAFRFLHVSTDEVYGSLAPAAAAFTEEHNYEPNSPYSASKAASDHLVRAWHHTYGLPV
LTTNCSNNYGPLHFPEKLIPLMIVNALAGKSLPVYGDGMQIRDWLYVKDHCSAIRRVLQA
GRLGETYNVGGWNEKPNIDIVNTVCALLDELRPRSDGQSYTTQITYVTDRPGHDRRYAID
ARKIERELAWRPAETFETGIRKTVQWYLDHPEWVAQVQSGAYREWVQKQYAAA
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgattctggtaacaggcggcgcaggcttcattggcgccaactttgtgctcgactggctg
gctgtcggtgacgagccggtggtgaacctggacaagcttacctacgcgggcaacctgcac
aacctggacagcctgcagggcgatgcccgccacgtgttcgtgcagggcgacatcggtgac
cgcacgctgctggaccgtctgctggccgagcaccagccacgcgccgtgatcaacttcgcc
gccgaatcccacgtagaccgctccatccacggccccgaggacttcatccagaccaacgtc
gtcggcaccttcaggcttttggaggccgtaaggcactactggcaagcgctgccagctaca
caaaaagaagcattccgcttcctgcacgtgagcaccgacgaggtctatggcagtctggcg
ccggctgctgcggccttcaccgaagagcacaactacgagcccaacagcccgtactccgcc
agcaaggcggccagtgaccacctggtacgggcctggcaccacacctacggcctgccggta
ctcaccaccaactgcagcaacaactacggcccgctgcactttccggaaaagctcatcccg
ctgatgatcgtcaacgccctggcaggcaagagcctgcccgtgtatggcgacggcatgcag
atccgggactggctgtacgtcaaggaccattgcagcgccatccggcgcgtgctgcaggcg
ggcaggctgggcgagacctacaacgtaggcggctggaacgaaaagcccaacatcgacatc
gtcaacaccgtgtgcgccctgctggacgagttgcgcccgcgcagcgacggccagagctac
acgacgcagatcacctacgtgaccgaccgccctggccacgaccggcgctacgccatcgac
gcacgcaagatcgaacgcgaactcgcgtggcgcccggccgagaccttcgagaccggcatc
cgcaagaccgtgcagtggtatctggatcacccggaatgggtggcgcaggtgcagtccggt
gcctatcgcgaatgggtacaaaaacagtacgctgccgcatga
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