Diaphorobacter sp. JS3050: HND92_07280
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Entry
HND92_07280 CDS
T10221
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dij Diaphorobacter sp. JS3050
Pathway
dij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HND92_07280 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dij03019
]
HND92_07280 (rnr)
03016 Transfer RNA biogenesis [BR:
dij03016
]
HND92_07280 (rnr)
Enzymes [BR:
dij01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HND92_07280 (rnr)
Messenger RNA biogenesis [BR:
dij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HND92_07280 (rnr)
Transfer RNA biogenesis [BR:
dij03016
]
Prokaryotic type
tRNA degradation factors
HND92_07280 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QJY32812
LinkDB
All DBs
Position
1478592..1480886
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AA seq
764 aa
AA seq
DB search
MYIKKNHSESSVAKVSLDEIEGTVQGHRDGHGFVLRDDGQPDIYLPANEMRAVLHKDRVR
VRIARQDRRGRPEGRVVEILERPPQPIIGRLLQESGVWLVAPEDKRYGQDVLIPKGATGA
AATGQVVVVELTEPPALFGQPVGRVVEVLGEVDDPGMEVEIAVRKYGVPHEFSEACLDQA
KALPDKVRAQDKRRRVDLTDVPLVTIDGEDARDFDDAVYCEPAKIGRAKGWRLLVAIADV
SHYVETGNAIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPHVERLCMVCDMMVTAK
GEIHAYQFYPAVMLSHARLTYTEVAAVLANTRGPEALKHQERVGNLLNLYEVYRALLAAR
QARGAVDFETTETQIVCDDNGRIEKIVPRVRTEAHRLIEEAMLAANVCSADFIGHAGRAG
LYRVHEGPTPEKQEILRAYLKAMGVGMSIGDDPRPAEFQAIAEATKDRVDAQQIHTMLLR
SMQQAIYTPVNSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKSILSGTKYVLPALPTPGE
AQFKLAKRLASKGGESSARPSKTGGVISVRETQAWEAAGLHCSANERRADEASRDVEAWL
KCQYMREHLGEEYSGVVSAVTSFGIFVTLDALYVEGLVHITELGGEYFKFDEARQELRGE
RTGIRYAIGARVRVQVSRVDLDGRKIDFRLVHEAGDGFSTKGPKSRDGAKRGSSAAALDG
RSASVPTARESREEGSRRRPHKQALAGKKAAGGKNPSKGRKSRG
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
ttgtatatcaaaaaaaatcactctgaatcatccgtcgccaaagtttcactggacgagatc
gaaggcaccgtccagggacaccgcgacgggcatggcttcgtcctgcgcgatgacggccag
cctgacatctaccttcctgccaatgaaatgcgggcggtattgcacaaggaccgggtgcgc
gtgcgcatcgcgcgccaggaccggcgcggccggcctgaaggccgcgtggttgagattctg
gagcgcccgccccaacccatcatcgggcgccttcttcaggagagcggtgtctggctggtc
gctcctgaggacaaacggtacggccaggacgtgctgattcccaagggtgctacgggggct
gctgcgacgggacaggtcgtggtggtggaactgaccgagccgccggctttgtttgggcaa
cccgtggggcgggtggtcgaagtgctgggggaggtagatgaccccgggatggaggtggaa
attgccgtgcgcaaatacggggttccgcacgaattctccgaagcgtgccttgaccaggcg
aaggcgctgccggacaaggtgcgcgctcaggacaagcgtcgacgcgttgatctgacagat
gtccccctggtcaccatcgatggtgaagacgcgcgcgacttcgacgacgcggtgtattgc
gagcccgccaagatcgggcgcgccaaggggtggcgcctgctcgtggccatcgcggacgtg
agccactatgtggagacgggcaacgccatcgatattgacgcctacgaccgggcgaccagc
gtttatttcccgcggcgcgttatccccatgctgccggagaagctctccaacgggctgtgc
tcgctgaacccccatgtcgagcgcctgtgcatggtgtgcgacatgatggttaccgccaaa
ggtgaaattcacgcctatcagttctatcctgcggtcatgctcagccacgcgcggcttacc
tataccgaggtggctgcggtgctggccaatacgcgcggcccggaagcgctgaagcatcaa
gagcgcgtgggcaacctgctcaatctctacgaggtctaccgcgcattgctggccgcgcgg
caggcgcgcggcgccgtggacttcgagacgaccgagacgcaaatcgtctgtgatgacaat
ggccgtatcgagaaaatcgtcccgcgtgtacgcaccgaggcgcaccgcctgattgaggag
gcgatgctcgccgccaacgtctgcagcgccgatttcatcggtcatgccggccgggcgggg
ctgtatcgcgttcatgaggggcctacgccggagaagcaagagatcctgcgtgcatatctc
aaagccatgggtgttggcatgtcgatcggggacgacccgcggccggcagaattccaggcg
attgccgaggccaccaaggaccgggtggatgcgcagcagatccacaccatgctgctgcgt
tcgatgcagcaggcgatctacacgcctgtcaacagcggtcacttcggtttggcattcgaa
gcctatacacacttcaccagtcctattcgccgctacccggatctgctggtgcatcgcgtg
atcaagtccatcttgagcggcacaaaatatgtgctgcccgcgctgccgacgccgggggag
gctcagttcaagctggccaagcgtctggcttccaaggggggggaatcctctgcacgccct
tccaagacgggtggcgttatcagcgtccgggagacgcaggcgtgggaggccgcgggactg
cactgcagtgcgaacgaacgccgtgcggacgaggccagtcgtgacgtggaagcatggctc
aaatgccagtacatgcgtgagcatctgggtgaggagtacagcggtgtcgtcagcgcggtg
acgagcttcggcatcttcgtgacgcttgatgccctctatgtggaagggctggtgcacatc
acggaactgggtggggagtacttcaagttcgatgaggcgcggcaagaactgcggggggag
cgcacgggtatccgctatgcgattggtgcacgcgtgcgtgttcaggtcagccgcgtcgac
ctcgatggccgcaagatcgacttccggctggtgcacgaagccggcgacggtttctccacc
aaaggccccaagtccagggatggcgcgaaacgcggttcctcggcagcggccttggatggt
cgatccgcctcggtgcccacggcccgggaaagcagagaggaggggagccggcggcgcccg
cataagcaggccttggccggcaaaaaagcggcaggtggcaagaacccttctaagggccgc
aaatcccgcggttga
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