Diaphorobacter sp. JS3050: HND92_08305
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Entry
HND92_08305 CDS
T10221
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dij Diaphorobacter sp. JS3050
Pathway
dij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HND92_08305 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dij03021
]
HND92_08305 (rho)
03019 Messenger RNA biogenesis [BR:
dij03019
]
HND92_08305 (rho)
Transcription machinery [BR:
dij03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HND92_08305 (rho)
Messenger RNA biogenesis [BR:
dij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HND92_08305 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJY32987
LinkDB
All DBs
Position
complement(1692754..1694016)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEDLEIENGGRMRKQELMFAIIKKRAKAGEQIFADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVN
GGPPEQNKHKVMFENLTPLFPKEQMRLEREIKGEENITGRIIDIIAPIGRGQRALIVAPP
KSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLSRRLYEKRVFPAIEL
NKSGTRREELLLAPEILQKTRILRQFMYNMDEIESMELMIKKMKETKNNVEFFEAMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaacgaactcaaggcactgcacgtgtctgaagtcctcaagcaggccgaagac
ctggaaatcgaaaacggcggccgcatgcgcaagcaggagctgatgttcgccatcatcaag
aagcgtgcaaaagccggcgagcagatttttgccgacggcgtgcttgagatcctgcccgac
ggcttcggcttcctgcgcagccccgacaccagctacaccgcgagcaccgacgacatctat
atcagtccgagccaggtgcgccgcttcaacctgcacaccggcgacatgatcgaaggcgag
gtgcgcacgcccaaggatggcgagcgttacttcgcgctgaccaagcttgactccgtcaac
ggcggcccgcccgagcagaacaagcacaaggtgatgttcgagaacctcacgccgctgttc
cccaaggagcagatgcggctggagcgcgagatcaagggcgaggagaacatcaccggccgc
atcatcgacatcattgcccccatcggccgcggccagcgcgcgctgatcgtcgcgcctccg
aagagcggcaagacggtgatgatgcagcacatcgcccatgccatcacggccaacaacccc
gatgtgcacctgatggtgctgctggtggacgagcgccccgaggaagtgaccgagatgcag
cgctcggtcaagggcgaaatcattgcgtcgaccttcgacgagcccgccgcacgccacgtg
catgtggccgagatggtgatcgagcgcgccaagcgcctcgtggaactgaaaaaggacgtg
gtgatcctgttggattccatcacccgcctggcccgcgcctacaacaacgtggtgccctcc
agcgggaaggtgctctccggcggcgtggactccaacgccctgcaacgccccaagcgcttc
ttcggcgcggcgcgcaaggtcgaggaaggcggctcgctgaccatcattgccacggcgctg
gtcgataccggcagccgcatggacgaagtgatctttgaagaattcaagggcacaggcaac
tgcgaaatccacctgagccgccgcctctacgaaaagcgcgtgttcccggccatcgagctc
aacaagagcggcacacgccgcgaggaactgctactggcacccgagatcctgcagaagacg
cgcatcctgcgccagttcatgtacaacatggacgagatcgagtccatggaactcatgatc
aagaagatgaaggaaacaaagaacaacgtggagttcttcgaggccatgcgccgcggcggc
tga
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