Diaphorobacter sp. JS3050: HND92_08535
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Entry
HND92_08535 CDS
T10221
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dij Diaphorobacter sp. JS3050
Brite
Enzymes [BR:
dij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HND92_08535 (hrpA)
Messenger RNA biogenesis [BR:
dij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HND92_08535 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QJY33029
UniProt:
A0A6M6I577
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All DBs
Position
1743890..1747915
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AA seq
1341 aa
AA seq
DB search
MPLTITFPEQLPVSSRRDEIMAAMAEHQVIIVCGETGSGKTTQLPKIALALGRGKCNAPE
GTRGRLIGHTQPRRIAASSVAKRIAEELNTPLGEVVGYKVRFQDTLQKGASVKLMTDGIL
LAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKQILPQRPDLKVVVTSATIDAERFA
KHFEGKAGPAPVIMVSGRTYPVEMRYKPFEEKKDFDLNDAIADGVDELWAGGKGGDILVF
LPGEREIREAADHLRKHLQHSPVLRNAEVLPLFSRLSQAEQDRIFDGHTGRRIVLATNVA
ETSLTVPGIRYVIDAGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGICIRL
YDEADFHQRDRFTDPEILRSSLAGVILRMKSLGLGDVVNFPFLEAPSGRAIADGYQLLQE
LGAVDERGNLLPMGRELSRLPLDPRVGRMILEARTRGAVAEVLVIASALSVQDVRDRPLE
AQQQADQQHAKFDDEKSEFTGYLRLWKWLQDARGGKIVAKTRKEMAAQTAPAAQARNTAF
LPVAQRSSGAQAEAAGEERLAQFHPADAEEATHKLSNRQWEQLLRQNYINIRRVREWRDI
HSQLLTVVREHQWQVNTEPAGYEAVHLSMLSGLLGNIGYKAEESEAYLGAHGIKFHPHPG
AHLSKKPGRWIVAAEQVETSRLYGRGIAAIEPQWLEEVGGHLLKKQLLDPHWSKKQADVV
ALERATLYGLVVYNGRRVSYGRVDPYEARNLFIRQALVEGEWETHWPFLGANLKLVRKVQ
ELEHKSRRQDVLVDDELIFAFYDQQIPKDVYSGATFDKWFRSAGKENAGLLFLKRDELMR
HEAAGITTDNFPKTVKLGGVDCTASYLHSPGDARDGVTVTVPLFVLNQVSEERAEWLVPG
MLKDKIQALLKSLPQRPRSRFVPLPESAARLASLFTEEERWAQGSLIDTLLKQVRDETSL
DVKRADFKLDMLSPHLFMNFRVTDEHGRQLGQGRNLGALKAEWGSKARGAFQALASLKIA
GGAHQKPDSGGKPSETKENRAPAAIKKEPLVGAPAARKADARYEDWSFGELPELMEIAKG
SQTLIGFPALIDHGDAVGIEVFDEPEVAAARHRVGLRRLFALQIKDALKYLEKNIPDLQK
MAVAFVPLGTQEELRAQIIDVAIDRAFLQEPLPSNEAQFKQRVQDGRGRLTLIANEVARM
AAAILIEYAATQRKIKDTKNAPEATADASQQLQRLMPKQFIAAAPWAQLQHYARYLKAIA
TRLDKYRADPARDAAKLKELQPLEQRYWRMVAERKGQVDARMQEYRWMLEELRVSFFAQE
LRTPYPVSGKRLDKVWSQLVS
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcacgatcacctttcccgagcaactccccgtttccagccgccgtgacgagatc
atggcggccatggccgagcaccaggtcatcatcgtctgcggcgagacgggctcgggcaag
accacgcagctgccaaaaatagcgctggccctgggacgcggcaagtgcaacgcccccgag
ggcacgcgcgggcgcctgatcggccacacccagccgcggcgcattgccgccagcagcgtg
gccaagcgcattgccgaggagctgaacacccccttgggcgaggtggtgggttacaaggtg
cgctttcaggacacgctgcaaaagggcgcttcggtcaagctgatgaccgacggcatcctg
ctggccgagacgcagaccgatccgctgctcaaggcctacgacacgctcatcatcgacgag
gcgcacgagcgcagcctgaacatcgacttcctgctgggctacctcaagcagatcctgccg
cagcggcccgatttgaaggtggtcgtgacctcggccaccatcgacgcggagcgcttcgcc
aagcacttcgagggcaaggccggtccggcgccggtcatcatggtgtcggggcgcacctat
cccgtggagatgcgctacaagccctttgaagaaaagaaggactttgacctcaacgatgcc
attgccgacggcgtggacgagttgtgggcgggcggcaagggcggagacatcctcgtcttc
ctgcccggcgagcgcgagatccgcgaggcggcggaccacttgcgcaagcacctgcagcac
tcgccagtgctgcggaacgccgaggtactccccctgttctcgcgcctgtcgcaggccgag
caagaccgcatcttcgacggccacaccggacggcgcatcgtgctggccaccaacgtggcc
gagacctcgctcaccgtgccgggcatccgttacgtcattgacgcaggtacggcgcgcgtg
aagcgctattccttccgtagcaaggtggagcagttgctggtggagcccatcagccaggcg
gcggccaaccagcgcgccgggcgctgcggccgcgtggccaacggcatctgcatccgcctg
tacgacgaggcggacttccaccagcgcgaccgcttcaccgaccccgaaatcctgcgctcg
tccctggcgggcgtcatcctgcgcatgaagtcgctgggcctgggcgacgtggtgaacttc
ccgtttctcgaggcgccctcgggccgtgcgatcgccgacggctatcaactgctgcaggag
ttgggcgccgtggacgagcgcggcaatttgctgcccatgggccgcgaactgtcgcgcctg
cccttggacccgcgcgtgggccgcatgatcctggaggcccgcacccgcggcgccgtggcc
gaggtgctggtcattgcctcggccctcagcgtgcaggacgtgcgcgaccggccgctggag
gcgcagcagcaggccgaccagcagcatgccaagttcgatgacgagaaaagcgagttcacc
ggctacctgcgcctgtggaagtggctgcaggatgcgcgcggcggcaagatcgtcgccaag
acgcgcaaggagatggcggcccagaccgcccccgcggcccaagcgcgcaacacggccttc
ctgcccgtcgcacagcgcagcagcggcgcgcaagcggaggccgcaggcgaggagcgcctg
gcgcagttccaccccgccgatgcggaggaggccacccacaagctcagcaaccggcagtgg
gagcagttgctgcgccagaactacatcaacatccgccgcgtgcgcgagtggcgcgacatc
cattcgcagctgctcaccgtggtgcgggagcaccagtggcaggtgaacaccgagcccgcg
ggctacgaggccgtgcacctgtccatgctgtcgggcctgctgggcaacattggttacaag
gccgaggagagcgaggcctacctgggcgcgcacggcatcaagttccacccgcacccgggc
gcgcacctgtccaagaagcccggccgctggatcgtcgcagccgagcaggtcgagacctcg
cgcctgtacggccgcggtatcgcggcgatcgaaccgcaatggctggaagaggtgggcggc
catctgctcaagaagcagctgctggacccgcattggtccaagaaacaggccgacgtggtc
gcgctcgagcgcgccacgctctacggcctggtggtctacaacggccgccgcgtgagctat
ggccgcgtggatccgtacgaggcgcgcaacctgttcattcgccaggcgctggtcgagggc
gagtgggagacgcattggccgttcctgggcgccaacctcaagctggtgcgcaaggtgcag
gagctggagcacaagagccgccgccaggacgtgctggtggacgacgagctcatcttcgcc
ttctacgaccagcagattcccaaagacgtgtacagcggcgccacgttcgacaagtggttc
cgcagtgccggcaaggagaacgccggcctgctgtttctcaagcgcgacgagctgatgcgc
catgaggccgcgggcatcaccaccgacaactttcccaagacggtgaagctgggcggcgtg
gactgcacggccagctacctgcacagccccggtgacgcgcgcgatggggtcaccgtcacg
gtgccgctgttcgtgctgaaccaggtgagcgaggagcgtgcggaatggctggtgcccggc
atgctcaaggacaagatccaggcgctgctcaagagcctgccgcagcgcccgcgcagtcgt
ttcgtgccgctgccggaaagtgctgcgcggctggcgtcgctgttcaccgaggaagagcgt
tgggcccagggcagcttgatcgacacgctgctcaagcaagtgcgcgatgaaacctcgctc
gacgtgaagcgcgcggacttcaagctggacatgctcagcccgcacctgttcatgaacttt
cgcgtgacggatgagcacggccgccagctcggccagggacgcaacctgggcgcgctcaag
gcggagtgggggagcaaggctcgtggggcgttccaggcgcttgcttcattaaagatagct
ggtggcgctcaccagaagccagattccggtggaaaaccatctgaaaccaaggaaaataga
gcgccagcagctatcaaaaaagaaccactcgtcggcgcgcccgcggcacgcaaggccgat
gcccgctacgaggattggagctttggcgaactgcccgagctgatggaaatcgccaagggt
agccagacgctgatcggtttccccgcgctcatcgaccatggcgatgcggtgggcatcgag
gtgttcgacgaacccgaagtcgccgccgcgcgccaccgcgtgggcctgcgccggctgttt
gcgctgcagatcaaggacgcgctcaagtacctggaaaagaacatccccgatctgcagaag
atggctgtggccttcgtgccgctgggcacgcaggaggagctgcgcgcacaaatcatcgac
gtggccatcgaccgcgccttcctccaagagccgctgcccagcaacgaggcacagttcaag
cagcgcgtgcaggacgggcgcgggcgcctcacgctgatcgccaacgaggtggcgcgcatg
gcggcggccatcctcatcgaatacgccgccacgcagcgcaagatcaaggacaccaagaac
gctcccgaggccacggccgacgcgtcacagcagctgcagcgcctgatgcccaagcagttc
atcgccgccgcgccctgggcgcagctgcagcactacgcgcgctacctcaaggccatcgcc
acgcgcctggacaagtaccgcgccgacccggcacgcgatgccgccaagctcaaggaactg
cagccgctggagcagcgctattggcgcatggtcgccgagcgcaagggccaggtggatgcc
cgcatgcaggagtaccgctggatgctggaggaactgcgcgtgagcttcttcgcgcaggag
ttgcgcacgccgtatccggtcagcggcaagcggctggacaaggtctggtcgcaactggtg
tcttga
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