Diaphorobacter sp. JS3050: HND92_13745
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Entry
HND92_13745 CDS
T10221
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dij Diaphorobacter sp. JS3050
Pathway
dij02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dij00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HND92_13745 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dij03021
]
HND92_13745 (rpoD)
Transcription machinery [BR:
dij03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HND92_13745 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
QJY33923
LinkDB
All DBs
Position
2862511..2864904
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AA seq
797 aa
AA seq
DB search
MPVQKSAKSPKSASGTPAKAASKAATTVKAAAKAPAKAAPVKAAAAAPKAAPKVKTVSTP
KTAAELKKAADELLKKKPARAKAAAAEPEVAEEAPKKKPGRPAKAAGTTAAAKRGRKPKA
KEEGLEDDADLSDIESDLEGEPEAEVVEAAEAAPVEKAKPLRMKISKAKERALMKEFGLD
ETVLSEEDMAKRRSQLKKLITLGKTRGYLTQVEISDHLPDKLVDAETMEVVVAMLGDMGV
AVYEQTPDAETLFQNNVTPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGKVE
LLTREGEIEIAKRIEGGLMDMMEAISASPATIAEILNMGEEIREGKVVISTVVDGFSNPN
EADDYVAEEDFDEFDEEDDDDGKGGSKALTKKLEELKNEALRRFDTLRALFEKMHKIYDK
DGYGGPAYMKVQHEISAELMTIRFTAKTIEKLCDMVRAQVDDVRKMERELRRIIVDKCGM
PQETFIKDFPANLLNLQWVEKQAAAGKPWSAVMQRNIPPIQELQQKLMDLQARVVVPLSE
LKEINKRMNAGEASSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFE
PDASILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNNTAPVDAAMQ
AGLRDVVKDILDGLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRK
LKHPSRSDKLRSFIDSL
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttcaaaagtccgcgaagtcgcccaagtctgcctctggcacccccgcgaaggcc
gcttccaaagccgcaaccactgtgaaagccgccgccaaggcgcccgcgaaagccgcccct
gtcaaggccgctgccgccgcgcccaaggctgcgccgaaagtcaagactgtgtccacgccg
aaaactgctgccgagctgaaaaaagccgctgatgaactgttgaagaagaagcccgcgcgc
gccaaggcggctgctgccgagcccgaagtcgccgaagaggcgcccaagaagaagcccggc
cgccccgccaaggccgccggcaccaccgctgctgccaagcgcggccgcaagcccaaggcc
aaggaagaaggcctggaggacgacgccgacctgtccgacatcgagtccgacctcgaaggc
gagcccgaagccgaggtggttgaggccgccgaagccgccccggtcgagaaggccaagccc
ctgcgcatgaagatcagcaaggccaaggaacgcgccttgatgaaggagttcggcctggac
gaaaccgtcctgtccgaagaggacatggccaagcgccgctcgcagctcaagaagctgatc
acgctgggcaagacgcgcggctacctcacgcaggtggaaatctccgaccacctgcccgac
aagctggtggacgccgaaaccatggaagtcgtggtcgccatgctgggcgacatgggcgtg
gccgtgtacgagcaaacgcccgacgccgagacgctgttccagaacaacgtgacccccacg
gccaccaccgtggaggaggccgaggaagaagccgaggccgccctgtccaccgtggactcg
gaattcggccgcaccaccgaccccgtgcgcatgtacatgcgcgagatgggtaaggtggag
ctgctcacgcgcgaaggcgagatcgagatcgccaagcgcatcgagggcggcctgatggac
atgatggaggccatcagcgcctcgcccgccaccatcgccgagatcctcaacatgggtgag
gaaatccgcgagggcaaggtcgtcatctccaccgtggtggacggcttctccaatcccaac
gaggccgacgactacgtggccgaggaggatttcgacgagttcgacgaggaagacgacgac
gacggcaagggcggctccaaggcgctgaccaagaagctggaagagctcaagaacgaggcc
ctgcgccgcttcgacacgctgcgcgcgctgttcgagaagatgcacaagatctacgacaag
gacggctacggcggtcccgcgtacatgaaggtgcagcacgagatctcggcagagctgatg
accatccgtttcacggccaagaccatcgagaagctgtgcgacatggtgcgcgcccaggtg
gacgacgtgcgcaagatggagcgcgagctgcgccgcatcatcgtggacaagtgcggtatg
ccccaggagaccttcatcaaggacttcccggccaacctgctgaacctgcagtgggtcgag
aagcaggccgccgccggcaagccctggagcgccgtgatgcagcgcaacatcccgccgatc
caggaactgcagcaaaagctgatggacctgcaggcgcgcgtggtggtgccgctgtccgag
ctcaaggagatcaacaagcgcatgaacgcgggtgaagccagctcgcgcgacgccaagaag
gagatgatcgaggccaacctgcgcctggtgatctcgatcgccaagaagtacaccaaccgc
ggcctgcagttcctggatctgatccaggagggcaacatcggcctgatgaaggcggtggac
aagttcgaataccgccgcggctacaagttctcgacctacgccacgtggtggatccgccag
gcgatcacacgatccatcgcggatcaagctcgaaccatccgcatcccggtgcacatgatc
gagaccatcaacaagatgaaccgcatcagccgccagcacctgcaggagttcggcttcgag
cccgatgcgtccatcctggccgcgaagatggagatccccgaggacaagatccgcaagatc
atgaagatcgccaaggagccgatctcgatggaaacccccatcggcgacgacgacgacagc
cacctgggcgacttcatcgaggacagcaacaacaccgcacccgtggacgccgccatgcag
gccggcctgcgcgacgtggtgaaggacatcctcgacggcctgaccccgcgcgaagccaag
gtgctgcgcatgcgcttcggcatcgaaatgtccaccgaccacacgctggaagaagtgggc
aagcagttcgacgtgacgcgcgaacgcatccgccagatcgaggccaaggcgctgcgcaag
ctcaagcacccgagccgctcggacaagctgcgcagcttcatcgactcgctgtaa
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