Diaphorobacter sp. JS3050: HND92_15225
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Entry
HND92_15225 CDS
T10221
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dij Diaphorobacter sp. JS3050
Pathway
dij03410
Base excision repair
dij03430
Mismatch repair
dij03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HND92_15225 (recJ)
03430 Mismatch repair
HND92_15225 (recJ)
03440 Homologous recombination
HND92_15225 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dij03400
]
HND92_15225 (recJ)
DNA repair and recombination proteins [BR:
dij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HND92_15225 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HND92_15225 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HND92_15225 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
LON_substr_bdg
Motif
Other DBs
NCBI-ProteinID:
QJY34197
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Position
3171167..3172891
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AA seq
574 aa
AA seq
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MKIVARDIPPRVVWALEQAGVHPLLARLYAARGIRAKEELDDALARLLPPDTLMGVRQAA
ALLADAISQDRRLLIVADYDCDGATACAVGVRGLRLLGARHVQYLVPDRVVDGYGLTASI
AQRVHERGADVLITVDNGIASIEGVARAKALGLTVLITDHHLPGPELPAADAIVNPNQPG
CGFESKSIAGVGVMFYVLMALRAELRARGVFDKATQPKLEPLLPLVALGTVADVVRLDNN
NRRLVAQGLKRIRAGQMQPGIQALFDAAGRKAPVATTFDFGFALGPRINAAGRLADMTLG
IECLLTDDPARAADLARQLDAINRERRELEGGMREQALLLAESLFDEGEEPPPAISVFDP
DFHEGVVGIVASRLKDKLHRPTFVFAASSAPGKEHELKGSGRSIPGFHLRDALDLVAKRH
PGVILKFGGHAMAAGCTVAEEHFDLFEQAFAQVAQEWLDAATLTRRLETDGPLAPEYCRA
ELVDTLHREVWGQGFAPPTFSEEVQVLSQRLVGEARNHLSIKLLHQGQPVDAIWFGHTDP
LPERALLAFRLDVNEWRGERRVQFLVEGLESPAM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagtagcaagagacatcccgccgcgcgtggtctgggcgctggagcaggccggc
gtgcacccgctgctggcacgcctgtacgcggcgcgcggcatccgcgccaaggaggagctg
gacgacgccctcgcccgcctgctgccgccggacaccctcatgggcgtgcggcaggccgcg
gcgctgctggccgacgccatcagccaggaccggcgcctgctcatcgtggccgactacgac
tgcgacggcgccactgcgtgcgcagtgggggtgcgcggcctgcgcctgctgggcgcacgc
catgttcagtatttggtgcccgaccgcgtggtggacggctacggcctcaccgcctccatc
gcgcagcgcgtgcacgagcgcggcgccgacgtgctcatcaccgtggacaacggcatcgcc
agcatcgagggcgtggcgcgcgccaaggcgctggggctgacggtgctcatcaccgaccac
cacctgcccggccccgaactgcccgcggccgacgccatcgtcaaccccaaccagcccggc
tgcggcttcgagagcaagtccatcgccggcgtgggcgtgatgttctatgtactgatggcg
ctgcgcgccgagctgcgcgcgcgcggcgtattcgacaaggccacgcaacccaagctggag
ccgctgctgccgctggtggccctgggcaccgtggccgacgtggtgcgcctggacaacaac
aaccgccgcctggtggcgcagggcttgaagcgcatccgcgccggccagatgcagcccggc
atccaggccctgttcgacgcggccgggcgcaaggcccccgtcgccaccaccttcgacttc
ggctttgcccttgggccccgcatcaatgccgcggggcgcctggccgacatgacgctgggc
atcgaatgcctgctgaccgacgacccggcgcgcgccgccgacctggcccggcaactggat
gccatcaaccgcgagcggcgcgagctggaagggggcatgcgcgagcaggccctgctgctg
gccgagagcctgttcgacgaaggcgaggagccgccgcccgccatcagcgtgttcgacccg
gactttcacgagggcgtggtgggcatcgtggcctcgcggctcaaggacaagttgcaccgc
cccaccttcgtgttcgctgccagcagcgcgccgggcaaggagcatgagctgaagggttcg
gggcggtccatccccggctttcatctgcgcgacgcgctggacctggtagccaagcgccac
cccggcgtgatcctgaagttcggcggccacgccatggcggccggctgcaccgtggccgag
gagcatttcgacctcttcgagcaggccttcgcccaggtcgcacaggaatggctggatgcc
gcgacgctcacgcgccggctggaaaccgacggcccgctggccccggagtactgccgcgcc
gagctggtggacaccctgcaccgcgaggtctggggccagggctttgcgccgcccaccttc
agcgaggaggtgcaggtgctgagccagcgcctggtgggcgaggcgcgcaaccatctgtcc
atcaagctgctgcaccagggtcagccggtggacgccatctggttcggccacaccgacccg
ctgcccgaacgggcgttgctggccttccggctggacgtgaacgagtggcggggcgagcgg
cgggtgcagtttctggtggagggactggagtcgcctgcaatgtga
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