Diaphorobacter sp. LI3: MRB47_12370
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Entry
MRB47_12370 CDS
T12113
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dil Diaphorobacter sp. LI3
Pathway
dil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRB47_12370 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dil03021
]
MRB47_12370 (rho)
03019 Messenger RNA biogenesis [BR:
dil03019
]
MRB47_12370 (rho)
Transcription machinery [BR:
dil03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MRB47_12370 (rho)
Messenger RNA biogenesis [BR:
dil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MRB47_12370 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
UOB04236
LinkDB
All DBs
Position
2678146..2679408
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEDLEIENGGRMRKQELMFAIIKKRAKAGEQIFADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVN
GGPPEQNKHKVMFENLTPLFPKEQMRLEREIKGEENITGRIIDIIAPIGRGQRALIVAPP
KSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLSRRLYEKRVFPAIEL
NKSGTRREELLLAPEILQKTRILRQFMYNMDEIESMELMIKKMKETKTNVEFFEAMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaacgaactcaaggcactgcacgtgtctgaagtcctcaagcaggccgaagac
ctggaaatcgaaaacggcggccgcatgcgcaagcaggagctgatgttcgccatcatcaag
aagcgtgcaaaagccggcgagcagatttttgccgacggcgtgcttgagatcctgcccgac
ggcttcggcttcctgcgcagccccgacaccagctacaccgcgagcaccgacgacatctat
atcagtccgagccaggtgcgccgcttcaacctgcacaccggcgacatgatcgaaggcgag
gtgcgcacgcccaaggatggcgagcgttacttcgcgctgaccaagcttgactccgtcaac
ggcggcccgccagagcagaacaagcacaaagtgatgttcgagaacctcacgccgctgttc
cccaaggagcagatgcggctggagcgcgagatcaagggcgaggagaacatcaccggccgc
atcatcgacatcattgcccccatcggccgcggccagcgcgcgctgatcgtcgcccctccg
aagagcggcaagactgtgatgatgcagcacatcgcccatgccatcacggccaacaacccc
gatgtgcacctgatggtgctgctggtggacgagcgccccgaggaagtgaccgagatgcag
cgctcggtcaagggcgaaatcattgcgtcgaccttcgacgagcccgccgcacgccacgtg
catgtggccgagatggtgatcgagcgcgccaagcgcctcgtggaactgaaaaaggacgtg
gtgatcctgctggactccatcacccgcctggcccgcgcctacaacaacgtggtgccctcc
agcgggaaggtgctctccggcggcgtggactccaacgctctgcaacgccccaagcgcttc
ttcggcgcggcgcgcaaggtcgaggaaggcggctcgctgaccatcattgccacggcgctg
gtcgataccggcagccgcatggacgaagtgatctttgaagaattcaagggcacgggcaac
tgcgaaatccacctgagccgccgcctctacgaaaagcgcgtgttcccggccatcgagctc
aacaagagcggcacacgccgagaggaactgctgctggcacccgaaatcctgcagaagacg
cgcatcctgcgccagttcatgtacaacatggacgagatcgagtccatggaactcatgatc
aagaagatgaaggaaaccaagaccaacgtggagttcttcgaggccatgcgccgcggcggc
tga
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