Diaphorobacter sp. MNS-0: K2L43_07280
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Entry
K2L43_07280 CDS
T10618
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dim Diaphorobacter sp. MNS-0
Pathway
dim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K2L43_07280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dim03019
]
K2L43_07280
Enzymes [BR:
dim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K2L43_07280
Messenger RNA biogenesis [BR:
dim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K2L43_07280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QYY26920
LinkDB
All DBs
Position
complement(1501618..1503351)
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AA seq
577 aa
AA seq
DB search
MTFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQ
IERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLP
QSKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLH
IIQEHDWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRA
LVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEGFMM
EIERFTKQEIPVQVIDGFGPDEGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARQEM
MERIRTNKAATGGQRGSRQGGGQGEGQQRAGGQNGSGGRGGNAGNAGRPAGPRDQQRPQN
TAGGRRRGGPAGAGNGGGNGGNRRFDDSQPRSENAHLGTQLGNIGIGPRHGSGRASQPDP
MRTSVDSMADRGRRGGFGRGNGGGGGGRGPRGGGFGR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaactgaagctggcgccggccattttgcgggccgtgcaagaacaaggc
tacgacaacccgacccctatccaggcccaggccatcccggccgtcctcgctggacacgac
ctcctcgccggcgcacagaccggcactggcaagaccgccgcgttcacgctgcccatgctg
caccgcctggccgaaggccaagccccacgcagccagtttggcggcaagggtgtgcgcgcc
ctggtgctcacgcccacgcgggagctggcagcgcaggtcgaagaatccgtgcgcggctac
ggcaaatacctggatctgaactccactgtgatcttcggcggcgtcggtatgaacccccag
atcgaacgcatcaagcgcggcgtggacgtgctggtggccacccctggccgcctgctggac
ctgcagcagcaaggcttcatggacctgtccaccgtcgagatcctggtgctggacgaagcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaaggtgctggcgctgctgccc
cagtccaagcaaagcctgctgttctcggccacgttcagcgacgacatccgtgaactggcc
aactcactgctcaagaacccgcagagcatccaggtcaccccgcgcaacaccacggtgcaa
cgcatcagccaggtgatccaccccgtggggcgcggcaagaagaagcaggtgctgctgcac
atcatccaggagcacgactggagccaggtgctggtgttcacgcgcaccaagttcggcgcc
aacaacgtggccgagtacctgaccaagaacggcgtttcggccatggcgctgcatggcaac
aagagccagagcgcccgcacccaggcgctggagggcttcaagacgggccagatccgtgcc
ctggtggctaccgacatcgcggcacgcggcatcgacatcgacgacctgccgcacgtcgtg
aactacgaaatccccaacgtgcccgaggactatgtgcaccgcatcggccgcacgggccgc
gccggccgcgagggccatgccgtgagcctcgtctgcatggacgaggaaggtttcatgatg
gagatcgagcgcttcaccaagcaggaaatccccgtgcaggtgatcgacggctttggcccg
gacgagggagagaaggccgagcccatcgccatgggccgccagaccatctggggcggcgcg
ggcaagccgcccagccgcgaagtcatgcaggccgcggccaaggcggcacgccaggagatg
atggagcgcatccgcaccaacaaggcggccactggcggccagcgcggttcgcgccaaggc
ggtggccagggcgaaggccagcagcgcgccgggggtcagaacggcagcgggggccgcggc
ggcaacgcaggcaatgcaggccgtcctgccggtccacgtgatcagcaacgtccgcagaac
acggccggtggccgccgccgcggcggtcccgcgggtgcaggcaatggcggcggtaatggc
ggaaatcgccgtttcgacgacagccagcctcgcagcgagaacgcccacctgggcacgcag
ctcggcaacattggcatcggcccacgccatggcagcggccgtgccagccagccggacccc
atgcgcaccagcgtggacagcatggcggaccgcgggcgtcggggcggcttcggccgtggc
aacggcggcggcggtggtggccgcggcccacgcggtggcggcttcggccgctga
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