Diaphorobacter sp. MNS-0: K2L43_14170
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Entry
K2L43_14170 CDS
T10618
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dim Diaphorobacter sp. MNS-0
Pathway
dim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K2L43_14170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dim03019
]
K2L43_14170
03009 Ribosome biogenesis [BR:
dim03009
]
K2L43_14170
Enzymes [BR:
dim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K2L43_14170
Messenger RNA biogenesis [BR:
dim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K2L43_14170
Ribosome biogenesis [BR:
dim03009
]
Prokaryotic type
rRNA processing factors
K2L43_14170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
QYY24824
LinkDB
All DBs
Position
2959695..2962772
Genome browser
AA seq
1025 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQARIQDVIKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAH
QFMAHVMPEHAGKVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQ
MLRMIQEESMKDSTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVVLIPNKSLETPH
YKLERLKHDDPRLENLDASYKLADVEEDQTKVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPEGAARGATRPQGQGQQRPATAPTPAPQRPAAAPAPEQGFFAWIKSLFGFGAAPAPAP
VAAPAQTPAEPGARGEGRRGERGGRRGERTGERSGERGGERNGNREGGEGRGRRGEGRGG
ERSAEGRENREPREPRNGRDGERRGERAEGESRREPREGRGGRERGERNAQPPMQSAADP
ANTPVTTDADVAVTEERSARTGERGERRERGERGERRERGGERRERGPRTIDANAPAAGA
DFADTAPLAALPDLDLSGAEVGTSGAEAPAGEERRERRSRDRYGRDRRERGERSPRNAEA
SATGADAEAPAAPLMDLDLPAPAAAAEEDSAPARRSYFASAPASAPAAAPQAAPEATAAV
TPPPAAVPVPAPAPAPVAAAPVPAPAPAATAVAPATGGMPRVQAFTLPVDTLQQVAQASG
LQWVNSDAQKIAAAQAAIAAEPKPVHVPRERAPVVVLDEGPLVLVETRRDLGAMQLPFDQ
DNAAA
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaatgccacgcagcccgaggagcggcgcctggccatcgtggac
ggccagaagctgctggactacgagatcgagatcgaagggcgcgagcagcgcaagggcaac
atctacaaagccgtcgtcacgcgcgtggaaccgtcgctggaggcctgcttcgttgactat
ggcgaagaccgccacggcttcctgccgttcaaggaaatctccaaacagtatttcgccgag
ggcgtatcacccagccaggccaggatccaggacgtgatcaaggaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccaccttcatcagc
ctggccggccgctatgtggtactgatgcccaacaacccgcgcggcgggggcgtgtcgcgc
cgcattgagggcgaggaccgcgccgagctcaaggaggcgatggaccagctggagtacccc
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgttccgcgcccgagttgcaa
tgggatctgaactacctgctcaagctgtggaccgccatcgatggcgctgccaaggccggc
aagggcgccttcctcatctaccaggaatccagcctggtgatccgcgccatccgcgactac
ttcaacagcgacatcggtgacatcctcatcgacactgacgacatatacgagcaggcgcac
cagttcatggcgcacgtcatgcccgagcatgccggcaaggtcaagcgctaccgcgacgac
gcaccgctgttctcgcgcttccagatcgagcaccagatcgagtccgcctacgcgcgcacc
gtgaccctgccctcgggcggcgccatcgtgatcgaccacaccgaggcgctggtcagcgtg
gacgtgaactcggcacgcgccatcaagggcggcgacatcgaggaaaccgccacgcgcacc
aacctggaggccgccgacgaggtggcacgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggaaagcaagaaccgccgcgaagtggaaaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcgcgcgtgcagttcggcaccatcagcaagttc
ggcctcatggagatgagccgccagcgcctgaagccctcgctgtccgaaggcgcgcacatc
cgctgcccgctgtgcgacggcaccggccacgtgcgcgacacggaaggcttctcgctgcag
atgctgcgcatgatccaggaagagtccatgaaggacagcaccgccgccgtgcactgccag
gtgccggtggaggtggccagcttcctgctcaacgaaaagcgcaccgagatcgccaagatc
gaactcaagcagcgcgtctccgtggtgctgatccccaacaagtcgctggaaacgccgcac
tacaagctggagcgcctcaagcacgacgacccgcgcctggaaaacctggacgccagctac
aagctggccgacgtggaggaagaccagaccaaggtcacgcgccgctcgcaggagccgacc
aacaagcagacgcccgtgatcaagggcgtgttgcccgacgcaccggcccctgtggccgag
ccgcgccccgaaggcgccgcccgcggcgccacgcgcccgcagggccagggccagcagcgc
ccggcaacggcccccacgcccgcgccccagcgcccggccgccgcaccggcgcccgagcag
ggcttcttcgcatggatcaagagcctgttcggctttggcgccgcacccgcgcccgcacct
gtggccgcccccgcgcagacgcccgcggaacccggcgcacgcggcgaagggcgtcgcggt
gagcgcggcggtcgccgtggcgaacgcactggtgaacgcagcggcgagcgtggcggtgag
cgcaacggcaaccgcgaaggcggcgaaggccgcggccgccgtggcgaaggccgtggcggc
gagcgcagcgccgagggccgcgagaaccgcgaaccgcgtgagccacgcaatggccgcgac
ggcgaacgccgtggcgagcgcgcggaaggcgagagccgccgcgagccgcgcgaaggccgt
ggcggccgcgagcgcggtgagcgcaacgcacagccgcccatgcagtctgcggccgacccg
gccaacaccccggtcacgaccgatgccgacgtggcagtgaccgaggagcgctcggcacgc
accggcgagcgcggtgaacgccgcgaacggggtgaacgaggcgagcgccgtgagcgcggc
ggcgagcgccgcgaacgcggcccgcgcaccatcgacgccaacgcccccgccgctggcgcc
gactttgccgacactgcgcccctggccgcattgccggacctggacctgtccggcgctgaa
gttggtacgtccggcgccgaagcccccgccggcgaggagcgccgcgagcgccgttcgcgc
gaccgctatggacgcgaccgccgcgaacgtggcgagcgcagcccgcgcaatgccgaggcc
agcgccaccggtgccgatgccgaagcgcctgccgcgccgctgatggacctggacctcccc
gctcccgctgcggcggccgaggaagactccgcccccgcacgccgcagctatttcgcctcc
gctccggcatctgccccggcggcagcgccgcaagccgcgcccgaagccacggccgcagtg
acgccacccccggccgccgtgccagtccccgcaccggcgcccgcgcccgttgcagcggca
cctgtgcccgcaccggctccggctgccaccgcggtagcgccggcaaccggtggcatgccg
cgcgtgcaggcattcacgctgcccgtggacacgctgcagcaggtggcgcaggcttcgggc
ctgcaatgggtgaactccgacgcccagaagatcgccgccgcgcaggccgcgattgcggcc
gagcccaagcccgtccacgtgccgcgcgagcgtgcgcccgtggtggtgctggatgaaggt
ccgctggtgctggtggaaacccgccgcgacctgggtgcgatgcagctgccgttcgaccag
gacaacgcggccgcctaa
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