Desulfurispirillum indicum: Selin_1123
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Entry
Selin_1123 CDS
T01383
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
din
Desulfurispirillum indicum
Pathway
din03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
din00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Selin_1123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
din03019
]
Selin_1123
03016 Transfer RNA biogenesis [BR:
din03016
]
Selin_1123
Enzymes [BR:
din01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Selin_1123
Messenger RNA biogenesis [BR:
din03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Selin_1123
Transfer RNA biogenesis [BR:
din03016
]
Prokaryotic type
tRNA degradation factors
Selin_1123
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADU65858
UniProt:
E6W3Z0
LinkDB
All DBs
Position
complement(1235377..1237620)
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AA seq
747 aa
AA seq
DB search
MPQRDEKSLAEEILALLDTYGEPVPLRHLRGALGLSKSDTSTLQRVLLSLCKEGRAGRDT
SDRYFSASSALKGRVQVTQTPGTAFVTDETTSHEYRLLSADADTLMSGDIITFRILPNGR
ATIKEIVQRAVERMAGVVVVEGKQTLLNPYRKGIPWIRLNRTSAAAVSEGQGVVVRITSY
PGRNTLPEGEVVEVVGDASDAMVERTLVLEAYGLQLHFPPEVEREAQAVSRVVKTSTSRA
DYRKLLTCTIDGATARDFDDAISIETEQGNFRLYVHIADVSHYVTEGSALDLEAQNRATS
VYFPAYCIPMLPEALSNDICSLMPKVNRYAMTCVMDIDRQGNVTGYHITPSIIRSDRRFT
YEEVQEILDGNVHDRAFTAALEQMAKLAKILRRKRFTKGSIDFDRPEREVIVDEKGMVLD
VRRAERLFAHRLIEEFMLIANVTVARHLDSHGYPGIFRIHEEPDQQRMEEFARIAWNFGY
PLKGRSYHSSQLNTILEQSRGKPEEDLISTLMLRSMKRAVYSPESGLHYGLGFTHYCHFT
SPIRRYPDLIVHRSLRASLDTTKRARRHKRLEASAPHLAQHSSSQERKAADASTQMELLK
SVQFMRTFVGEEFSAIISGVTSWGIFVQLQTCYVEGLVHVSTLDKDYYLYQEETHELVGR
RTRQRFFLGMPVTVQLVRADVEKRELDFILVSSGSQPEHADTKKTSRSKAPRARTKKAKS
PSAAAAPLPHKRKGENRRTRGGGTQKR
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaacgtgacgagaagtctctcgccgaagagatcctggccctgctcgatacctat
ggcgaaccagtgcctctgcgccatctgcgtggagccctggggctttccaaatccgatact
tccaccctgcaacgggtactgctttcgctgtgcaaggaggggcgcgcggggcgcgatacc
tccgatcgttatttctctgccagttctgccctcaaggggcgggtgcaggtgacgcagact
ccgggaacggcttttgtgactgacgagactacttcccatgagtaccggctgctttccgcc
gatgccgatacgctgatgagtggcgacatcatcaccttccgcattctgcccaacggccgc
gcgacgatcaaggagatcgtacagcgcgcagtggagcgcatggcaggcgtggtggtggtg
gaaggcaaacagacactgctcaacccctatcgcaaggggataccctggattcgcctcaat
cgcaccagtgccgcagcggtcagcgaagggcagggggtggtggtcagaatcaccagctat
cccggtcgcaacaccctgcccgaaggcgaagtggtagaggtggtgggcgatgccagcgac
gccatggtggagcgcaccctggtgctggaagcctatggtctgcagctgcacttccctccc
gaagtggagcgcgaagcccaggcggtctcgcgggtggtcaagacatcaaccagccgcgct
gattaccgcaagctgcttacctgtaccatcgacggagccacggcgcgggattttgatgac
gccatcagcatcgaaacagagcaggggaacttccgtctctacgtccatatcgccgatgtg
tcccactatgtcaccgaaggcagcgcccttgacctggaggcccagaaccgggccacatcg
gtctattttcccgcctactgcattcccatgctgccggaagcgctctccaacgatatctgt
tcccttatgcccaaggtgaaccgctacgccatgacctgcgtcatggatatcgaccgccag
ggcaatgtgacgggttatcatatcacgccatccatcatccgttctgaccgccgttttacc
tatgaagaggtgcaggaaatcctggatggcaatgtccacgaccgggccttcacggctgcg
ctggaacagatggccaagctggcgaagattctgcgccgaaagcgcttcaccaaaggaagc
attgactttgatcgccccgaacgggaggtgattgtcgacgagaaggggatggtgctggac
gtgcgccgggcggaacggctctttgcccaccggctcatcgaggagttcatgctgatcgcc
aatgtcaccgtggcccgtcacctggacagccatggctatccaggcatcttccgcattcac
gaggagccggatcagcagcgaatggaagagttcgcccgcattgcctggaacttcggctac
cccctcaagggccgcagctaccactcgtcccagctgaacaccatcctggagcagagccgg
ggcaagcccgaagaagacctcatcagcaccctcatgctgcgcagcatgaagcgcgccgtc
tacagtccggaatccggcctgcattatgggctcggcttcacccactactgccacttcacc
agccccatacgccgctaccccgacctgatcgtccaccgcagcctgcgggcatccctggac
actaccaagcgcgcccgccgccacaaacggctggaagccagcgccccccacctggcccag
cacagcagcagccaggagcgcaaggccgccgatgcttccacccagatggagctgctgaaa
agcgtccagttcatgcgcacctttgtgggcgaagaattctccgccatcatcagcggcgtc
accagctggggcattttcgtacagcttcagacctgctacgtggagggcctggtgcacgtc
tccaccctggacaaggattactacctctaccaggaagagacccatgaactggtgggacga
cgcacccgccagcgcttcttcctgggtatgccggtgaccgtgcagctggtcagagccgac
gtggaaaagcgcgagctggacttcatcctggtcagcagcggcagccagccggaacatgca
gacacaaaaaaaacttcacgcagcaaagcccccagggcgcggacaaaaaaagccaaatcg
ccctcggcagcagccgcgcccctgccccacaaacgcaaaggggaaaatcgccgcacacgc
ggcggaggtactcagaagcgataa
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