Desulfurispirillum indicum: Selin_1208
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Entry
Selin_1208 CDS
T01383
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
din
Desulfurispirillum indicum
Pathway
din03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
din00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Selin_1208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
din03400
]
Selin_1208
Enzymes [BR:
din01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Selin_1208
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Selin_1208
DNA repair and recombination proteins [BR:
din03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Selin_1208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_SprT
Motif
Other DBs
NCBI-ProteinID:
ADU65943
UniProt:
E6W4G9
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All DBs
Position
1328829..1329665
Genome browser
AA seq
278 aa
AA seq
DB search
MPELPEVQTLVDDLCHRALVGQTISDVQVTWPRSIASHTPADFRHQLTGQTLTAIRRRAK
YLVMELSSGWGLLVHLRMTGKFDLCDPVKPRDIHEHVILCLGSGQELRFHDTRKFGRFSL
VPDTVGALSHLGVEPLSPEFTPEVLGRLLAGRNTMLKSFLLDQTKVAGIGNIYADEALFE
ARLHPANPCRLVAAEQVASLHGAIIMVLQRGLRNMGTSLGTSKGNFYSVAGRPGRNEDEL
KVFRRTGTPCCACGTTIERIILIQRSTHFCPLCQPLLA
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcctgaggtacagaccctggtggatgacctgtgccatcgtgcccttgtg
ggacagaccatctccgatgtccaggttacctggccccgctccattgccagccacactccc
gccgatttcaggcatcagcttaccgggcagacccttactgctatacgacggcgagccaag
taccttgtcatggaactgagcagtggctggggtctgctggtgcatctgcgcatgacgggc
aagtttgacctgtgtgatcccgtgaaaccccgcgatatacatgaacacgtcattctttgc
cttgggagcggtcaggaactgcgttttcacgatacgcgcaaattcggacgattttcactg
gtgcccgacaccgtgggggcactgtcccacctcggtgtggagccgctgtcaccggaattt
actcccgaagtgctgggcagactgctggcagggcgaaacaccatgctgaagagctttctg
ctggatcagaccaaggtcgcaggcattggcaatatctacgccgatgaagcgctgtttgaa
gcccgcctacacccggcaaacccctgtcgcctggtggccgcggagcaggtggcttccctc
catggcgccatcatcatggtgcttcagcggggcctgcggaatatggggacttccctgggt
accagcaagggcaacttctattccgtggctggccgcccaggccgtaatgaagacgaactg
aaggtctttcggcgcacgggcacgccctgttgcgcctgtggaaccaccattgagcgcatc
atcctgatccagcgctcgacccatttctgcccgctctgtcagccgctgctcgcctga
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